Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0234 ATGGGAAATTGCTGTGGAACTCGTTGCAAGGTTGATGACACTTTGAACTCCAACCACAGTTCTGCAGATGTTACCAAAGTTCACCGTAGAAGCACCCATTTGTTAGTTCATTCAAATCTAAACGGGCATGGATACAGTGATGAAGGCAAACCTGAGATTATTCTCCCCACTCCAAGATCTGAAGGGGACATACTTTCTTCCCCGCATTTAAAACCCTTCACATTGCATGATCTTAAGAAGGCCACTAGAAATTTCCAGCTTGATAGTCTTATTGGAGAAGGGGGATTTGGTTATGTGTATAAGGGGTTGATTAATGATGGTAAATCCTTTGGGCCTACAATGCCTAAATCTGGAACTGTTGTAGCTGTGAAGAAGCTTAAGCCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGTCTGAAGTCAACTATCTTGGACAACTTCGCCATCCAAATCTTGTCAAACTTATTGGATACTGTCTAGAAGGAGATAACCGACTTCTAGTATATGAGTACATGCCCAACAGAAGCTTGGAAGATCATATATTTCGAAAAGGCACACAACCACTTCCTTGGGCAACAAGAGTCAAGATTGCTATTGGTGCTGCTCAAGGTCTTTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATATTGTTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGCCCCACTGGTGATCGTTCTTATGTTTCCACTCAAGTCCTGGGAACTCATGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGTTGACTTCAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTATTGATAACACAAAATCTGGAGTGGAACATAATTTGGTAGAGTGGTCAAGACCCTATTTGGGTGATAGGAGGAAGTTGTTCCGGATCATGGACACCAAGTTAGAAGGGCAATACCCACAGAAGGCAGCTTATACAATTGCAATTATTGCCTTACAATGTATTAGTGAGGCCAAGACTAGACCGCAGATGTTTGAGGTTTTGGCTGCCTTGGAACACCTGCGAGCCATTAGACATTCAGCTAGCCCATCTGGAGAAGAGAAGTCCATGCCAAGCCCTATGTTAAAATCCCCTTTGGGACATAACCATCCAGAGTTGTGA 1203 0.4314 MGNCCGTRCKVDDTLNSNHSSADVTKVHRRSTHLLVHSNLNGHGYSDEGKPEIILPTPRSEGDILSSPHLKPFTLHDLKKATRNFQLDSLIGEGGFGYVYKGLINDGKSFGPTMPKSGTVVAVKKLKPEGFQGHKEWLSEVNYLGQLRHPNLVKLIGYCLEGDNRLLVYEYMPNRSLEDHIFRKGTQPLPWATRVKIAIGAAQGLSFLHDSKQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSYVSTQVLGTHGYAAPEYIATGRLTSRCDVYSFGVVLLELLSGRHAIDNTKSGVEHNLVEWSRPYLGDRRKLFRIMDTKLEGQYPQKAAYTIAIIALQCISEAKTRPQMFEVLAALEHLRAIRHSASPSGEEKSMPSPMLKSPLGHNHPEL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0234 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Gso5g0234 400 PANTHER OS01G0588500 PROTEIN-RELATED 26 388 - -
Gso5g0234 400 PANTHER BNAC02G17010D PROTEIN 26 388 - -
Gso5g0234 400 Pfam Protein tyrosine and serine/threonine kinase 86 362 IPR001245 GO:0004672|GO:0006468
Gso5g0234 400 Gene3D Phosphorylase Kinase; domain 1 57 171 - -
Gso5g0234 400 ProSiteProfiles Protein kinase domain profile. 85 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0234 400 MobiDBLite consensus disorder prediction 375 400 - -
Gso5g0234 400 ProSitePatterns Protein kinases ATP-binding region signature. 91 124 IPR017441 GO:0005524
Gso5g0234 400 SUPERFAMILY Protein kinase-like (PK-like) 63 366 IPR011009 -
Gso5g0234 400 CDD STKc_IRAK 91 368 - -
Gso5g0234 400 Gene3D Transferase(Phosphotransferase) domain 1 172 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0234 Gso-Chr5 2436487 2441193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0234 73 368 Glycoside Hydrolase AT3G07070 52.000 8.91e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso5g0234 PK_Tyr_Ser-Thr 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0234 - - gmx:100791844 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0381 1 4848803 4852689 Gso5g0234 5 2436487 2441193 PCT