Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0228 ATGGGATCAGAGAGTGTGGCTCCAATGGTTGAGACCTCGAAAAACAGGTCTTCTTCTGGTAAAATGAACCAAGGGAAAGTCCCCAGGAAAATTCACAAGGCTGAAAGGGAGAAAATGAAGCGTGAGCATTTGAATGAACGCTTTGTTGATCTTGCCAGTGCACTTGATCTAAATGAGAACAATGGAAAGGCTTCTATACTGTGTGAAACTGCCAGGTTGCTGAAAGACTTGCTCAGTCAGATCGAGTCCCTCAAGAAAGAGAATGTCACTCTGTTGTCTGAATCTCATTATATGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGCCTAGAAACTCAAATTGAGAAACTTCAAGGTGAGATACAGGCAAGACTGGCTCAATCTAAACCTGACCTGAATGTACCTCCCCATGAGCCACCGGAGCAGACAAATTTTCCAGGACAGAATCTCCAATTGCATACCATAGAACCTAACTTGCAGCAAGGATCTACGGTTTTGGTTGTCCCCTTTCATCCCAATCTTCAAGCTTCTTTTCCAGCTCCTAATGTTACCGAGGTCACACCGAAATCTATGTCTGTAGTCAGTAAACCACATGCTAGGTATCCCACACCGGCAGATTCATGGCCATCACAACTGCTTGGAGAGCAACCAACTTCAAGCTAA 669 0.4439 MGSESVAPMVETSKNRSSSGKMNQGKVPRKIHKAEREKMKREHLNERFVDLASALDLNENNGKASILCETARLLKDLLSQIESLKKENVTLLSESHYMTMEKNELKEENCSLETQIEKLQGEIQARLAQSKPDLNVPPHEPPEQTNFPGQNLQLHTIEPNLQQGSTVLVVPFHPNLQASFPAPNVTEVTPKSMSVVSKPHARYPTPADSWPSQLLGEQPTSS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0228 222 MobiDBLite consensus disorder prediction 1 24 - -
Gso5g0228 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 29 104 IPR036638 GO:0046983
Gso5g0228 222 MobiDBLite consensus disorder prediction 1 36 - -
Gso5g0228 222 Coils Coil 102 122 - -
Gso5g0228 222 Coils Coil 74 94 - -
Gso5g0228 222 PANTHER TRANSCRIPTION FACTOR BHLH47 5 221 - -
Gso5g0228 222 PANTHER TRANSCRIPTION FACTOR BHLH47 5 221 - -
Gso5g0228 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 77 IPR011598 GO:0046983
Gso5g0228 222 Gene3D - 20 94 IPR036638 GO:0046983
Gso5g0228 222 MobiDBLite consensus disorder prediction 197 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0228 Gso-Chr5 2401289 2403464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0228 15 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 47.788 6.80e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0228 - - gmx:100782436 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0228 5 2401289 2403464 Gso17g0833 17 7817080 7819457 GST