Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0227 ATGGAGGAAGACGACGATCTCCACCACCATCACCACCGTCAGAACAACTTCCCATTCCAGCTACTTGAGAAGAAAGAAGACCAAGAAACCGCCTCATGCTCCACCTCCTCCCTTTATCCTTCCCTAGCAATCTCCGCGGAACCGAGCACGTCCAATTCCACCCGATCCAACCAGCTCGCCGTGGCGGCTGCGGCGGAGGCTCCTAACAGCAAAAAGCCTCCGCCGAAGCGCACCTCGACCAAGGACCGGCACACGAAGGTGGACGGGCGCGGGCGGCGCATCCGAATGCCGGCCCTCTGCGCCGCCCGCGTCTTCCAGCTCACCCGCGAACTGGGCCACAAGTCGGACGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCTGCTGTGATCGCCGCCACCGGCACCGGCACCATCCCCGCCAACTTCACCTCCCTGAACATCTCCCTACGCAGTTCCGGCTCCTCCATGTCCGTCCCCTCCCAGCTCCGATCCTCCTACTTCAACCCCAATTTCTCCCTCCAACAACATCAACGTAGAACCTTCTTCCCCGGCATAGCCTTTTCCTCCGACAATACCAACAACAACACATCAACACTTCTCAATTTCCAATCCAACACCCTCAACACCACCATGCTGCAGCAGCAGGCCAAGCCGGAGCTTAGCGACGGCGGCGTGCCATCTTCCTTAGACATTTCAGACACAAACACAGAAGACACAACAACAACAACAACAACAACAACAAACCTAAGCCGCAAGAGAAGACCAGCAACTACAGAACAAGACCTATCCTCCAGCACGCAGCAGCACCAAATGGGTAGCTATCTCCTACAATCAAGTGCAGGCGCTATTCCAGCGAGCCACGCCGCCAACATATGGATGGTGGCCAATTCAAACTCGAATCAGGTCATGAGTGGCGATCCCATATGGACCTTCCCACCGGTTAACAACAGTGCTTTGTATCGAGGCACCATGTCTAGCGGCTTGCATTTCATGAATTTTCCTACGCCCGTGGCGTTGTTGCCGAGTCAGCAACTAGGGTCTTCTGGGAATATTGGTGCTGTTGGTGGAAGCAGTCATAATAATCACAATAATAATATCAATGAAGGGCATTTGAGTATGCTTGCGGGGCTTAGTCCTTATCGACCTGTTATTGGCGTTTCGGAATCTCAGGCGAGTGGCTCGCAATCGCATCGTGGAAGTGGCACCGATGATCGACATGATAATAGCTCCAGTCACCACTCCTAG 1251 0.55 MEEDDDLHHHHHRQNNFPFQLLEKKEDQETASCSTSSLYPSLAISAEPSTSNSTRSNQLAVAAAAEAPNSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQHQRRTFFPGIAFSSDNTNNNTSTLLNFQSNTLNTTMLQQQAKPELSDGGVPSSLDISDTNTEDTTTTTTTTTNLSRKRRPATTEQDLSSSTQQHQMGSYLLQSSAGAIPASHAANIWMVANSNSNQVMSGDPIWTFPPVNNSALYRGTMSSGLHFMNFPTPVALLPSQQLGSSGNIGAVGGSSHNNHNNNINEGHLSMLAGLSPYRPVIGVSESQASGSQSHRGSGTDDRHDNSSSHHS* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0227 416 MobiDBLite consensus disorder prediction 1 30 - -
Gso5g0227 416 MobiDBLite consensus disorder prediction 216 272 - -
Gso5g0227 416 MobiDBLite consensus disorder prediction 31 60 - -
Gso5g0227 416 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 415 IPR005333 GO:0003700
Gso5g0227 416 Pfam TCP family transcription factor 78 216 IPR017887 -
Gso5g0227 416 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 9 415 - -
Gso5g0227 416 MobiDBLite consensus disorder prediction 401 416 - -
Gso5g0227 416 MobiDBLite consensus disorder prediction 1 91 - -
Gso5g0227 416 ProSiteProfiles TCP domain profile. 80 134 IPR017887 -
Gso5g0227 416 MobiDBLite consensus disorder prediction 389 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0227 Gso-Chr5 2385895 2387941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0227 70 409 TCP Transcription Factor Family AT3G47620 44.743 3.19e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso5g0227 TCP 3.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0227 - - gmx:100790785 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0227 5 2385895 2387941 Gso17g0834 17 7828907 7831750 GST
Gso1g0393 1 5252477 5254623 Gso5g0227 5 2385895 2387941 PCT
Gso2g0887 2 10117806 10119765 Gso5g0227 5 2385895 2387941 PCT