Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0224 ATGGGGAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGACCTTGGACTCCAGAAGAAGACATCATCTTGGTGTCTTACATTCAAGAACAGGGACCAGGGAATTGGAGAGCAGTTCCAACCAACACAGGTTTGATGAGATGCAGCAAGAGCTGCAGGCTTAGATGGACTAACTATCTTCGACCAGGTATCAAACGAGGTAATTTCACGGAACATGAAGAGAAGATGATAATCCACCTCCAAGCCCTTTTGGGGAACAGATGGGCTGCAATAGCTTCATATCTTCCACAAAGGACAGACAACGACATAAAAAACTATTGGAACACCCATTTGAAGAAGAAGCTGAAACAAAGTGGGAGTGATGAGGGTGTTGACCAAGAGGGACATTCTTCTTCTTCTTCTTCTAATTCACATCCAAAGGGTCAATGGGAGAGAAGGCTGCAAACAGATATCCAAATGGCCAAGAAAGCCTTGTGTGATGCTTTGTCCCTTCACAAGCCAGCAACAGCAACAGCAACAAACCTTGTTGTGCCTGATGATGCCACCAAACCTTCTTCAACTTCTCACCAACCCTACAAGCATGCATCATCCTCATATGCATCAAGCTACGAGAACATTTCACGGTTGATGGAAAACTGGATGAAATCCCCAAACTCAAACTCAACAAATAATTCGCCAGGGTATTATTCTTCTTCCTTCAGCAACATGGTCAATAATAACACTACAACTGGATCCAGTTCTAGTGAGGGAGCACATAGCAACACCACTACTACAACACAAGATCAGGGTTTTGACTCCTTGTTAACCCTAAACTCCTCCAAACACCATGGCTCTTCATCTCAGACGCAAGTGCCTCTTACTCTGCTGGAGAATTGGCTCTTTGATGATGGGGCTGCTCAGTGCCATGAAGATCTGATGAACATGTCGCTGGAAGAAAGTACCGCAGGTTTGTTTTAG 960 0.4458 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEQGPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKQSGSDEGVDQEGHSSSSSSNSHPKGQWERRLQTDIQMAKKALCDALSLHKPATATATNLVVPDDATKPSSTSHQPYKHASSSYASSYENISRLMENWMKSPNSNSTNNSPGYYSSSFSNMVNNNTTTGSSSSEGAHSNTTTTTQDQGFDSLLTLNSSKHHGSSSQTQVPLTLLENWLFDDGAAQCHEDLMNMSLEESTAGLF* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0224 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso5g0224 319 CDD SANT 69 112 IPR001005 -
Gso5g0224 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 304 - -
Gso5g0224 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso5g0224 319 CDD SANT 16 61 IPR001005 -
Gso5g0224 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso5g0224 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso5g0224 319 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso5g0224 319 SMART sant 13 63 IPR001005 -
Gso5g0224 319 SMART sant 66 114 IPR001005 -
Gso5g0224 319 Gene3D - 13 66 - -
Gso5g0224 319 MobiDBLite consensus disorder prediction 118 146 - -
Gso5g0224 319 MobiDBLite consensus disorder prediction 125 143 - -
Gso5g0224 319 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 304 - -
Gso5g0224 319 MobiDBLite consensus disorder prediction 240 261 - -
Gso5g0224 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso5g0224 319 Gene3D - 68 144 - -
Gso5g0224 319 MobiDBLite consensus disorder prediction 176 199 - -
Gso5g0224 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0224 Gso-Chr5 2333934 2335788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0224 1 319 MYB Transcription Factor Family AT5G62470 51.801 5.45e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso5g0224 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0224 K09422 - gmx:100799402 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0224 5 2333934 2335788 Gso17g0840 17 7878560 7880592 GST