Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0221 ATGGAGTCTCAGCCACTTATGGGTTGGAGCTCTTTCTACGAAATAGATGAAGAACCATTTCCATTTACGTGCCAATTTTCTTACAGCGGAAACAGTGAAGTGTATCCCTCACTGGATTGGCCCTACGATTTTCCCATACAAGACTACTATATTGATGCTGTTCCTCTTATGGATTATTACCCTTCAGATCCTTTATATGAAACACTCACTACTGAACCAACACAAAGCGTGCAAGATTATGATTTTTATGACATTAAAAAGGGGCTACCTTTCTGGAAGGAAGTGGATGCTGTGTTTGATTCACAAAAAGTATTTTTATTTGGCAACAACGAAGAAAGTGGGACCAAGAAGGAAATGATGGAGGATGGAAAAGTTAACGACAACCGAGGGATAGAAGAGAGAATCAGCGGTAGCAGTAGCAGTTGCAGAATGTTGTCAAGGAAGACCATATCTCAGTACTTCTACATGCCCATAACACAAGCAGCCAGAGAACTTAATGTGGGCATAACCCTTTTGAAGAAAAGGTGCAGAGAGGTGGGTATTAGAAGGTGGCCCCACAGGAAGCTGATGAGCTTGCAAACTCTGATAAACAATGTACAGGAGCTAGGAAAAGAGGAGGGGAGAGAGAGTGAAGAGAAGTTAAGAAGTGCGATAGAGATATTAGAGAGGGAAAAGAAGGTTTTGGAGGAAATGCCGGATACTGAACTTGAAGACACTACAAAGAGGCTTAGACAAGCGTGTTTCAAGGCCAACTACAAGAAGAGGAAGCTCACAGTCACAGGGCGGGGGAGGGAACCACACTCTTCTTCTTTCAGTGGCTTTGTTGCTAGAAGTATTGTTAACGCAACGGGAGAATATAGTAATGAAAGTGAAGAAGAACGAGACATCAAGTATCTGTTGTCTCAGTTTCTGGAGTAG 918 0.4259 MESQPLMGWSSFYEIDEEPFPFTCQFSYSGNSEVYPSLDWPYDFPIQDYYIDAVPLMDYYPSDPLYETLTTEPTQSVQDYDFYDIKKGLPFWKEVDAVFDSQKVFLFGNNEESGTKKEMMEDGKVNDNRGIEERISGSSSSCRMLSRKTISQYFYMPITQAARELNVGITLLKKRCREVGIRRWPHRKLMSLQTLINNVQELGKEEGRESEEKLRSAIEILEREKKVLEEMPDTELEDTTKRLRQACFKANYKKRKLTVTGRGREPHSSSFSGFVARSIVNATGEYSNESEEERDIKYLLSQFLE* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0221 305 Pfam RWP-RK domain 145 192 IPR003035 -
Gso5g0221 305 ProSiteProfiles RWP-RK domain profile. 127 212 IPR003035 -
Gso5g0221 305 PANTHER PROTEIN RKD1-RELATED 38 266 - -
Gso5g0221 305 PANTHER PROTEIN RKD4 38 266 IPR044607 GO:0003700
Gso5g0221 305 Coils Coil 204 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0221 Gso-Chr5 2288707 2289966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0221 129 256 AtRKD Transcription Factor Family AT1G18790 66.406 4.64e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso5g0221 RWP-RK 1.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0221 - - gmx:100788666 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0221 5 2288707 2289966 Gso17g0842 17 7929105 7930260 GST
Gso5g0221 5 2288707 2289966 Gso4g1415 4 41729916 41739862 PCT
Gso5g0221 5 2288707 2289966 Gso6g1637 6 17340184 17341504 PCT