Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0213 ATGGAAAACGTTCCGGTGGTGTGTAAGGAAGATGATCAGATGGATTTGCCTCCCGGATTTCGATTCCACCCGACGGATGAAGAGCTCATAAGCCATTACCTCTACAAGAAGGTCATTGACACCAAGTTCTGCGCCAGGGCAATTGGAGAAGTGGACCTCAACAAGTCCGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCCACTGGCTTGAGAACCAACAGGGCCACAGAAGCTGGGTACTGGAAGGCCACAGGGAAAGACAAAGAGATTTTCAGAGGAAAATCTTTGGTTGGAATGAAGAAAACTCTGGTTTTCTACAGAGGTCGAGCACCCAAAGGAGAGAAAAGCAATTGGGTCATGCACGAGTACCGACTCGAGGGAAAATTCTCTGCTCACAACCTCCCAAAAACTGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAAACTCATATCTCGGGGATAATGAGGTTGGACTCTTTTGCTAATGAATTGGGTTCTTCTGCTCTGCCACCCCTTTCAGATTCTTCGCCTTCTATTGGCAACACTAAACCTCTGAATGATTCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCAAGAAGGTGTCTTCGATTCCTTCACCAACTCTATGTATGCGGTTTCTTCAAATCCTATGGACATTCTTCCCAGAATGCCACCTTCTGGCTCCTTCTACTCCACTCAAGGTGTTCAAGCTGCGCCTAATTTTGCATTTCCTGGTTCTGTTTACACTCTTCAGGACCACACCATCCTGAGAGCTTTGTGTGAAAACAATGGTTACAAGCCAGAGAGGGACATGATCAGTGTTTCGCAGGAAACGGGTCTAACTACTGACATCAACGCTGAAACCTCTTCAAATTTTGATGTGGGTTGGAGGCCCTTTGAGAATCACAATCATGCATCTGTTTCTGTTGCCCCATTGGATCTTGATGGTTTGTGGAATTACTAA 1053 0.4596 MENVPVVCKEDDQMDLPPGFRFHPTDEELISHYLYKKVIDTKFCARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSFANELGSSALPPLSDSSPSIGNTKPLNDSAYVPCFSNPIDVQRNQEGVFDSFTNSMYAVSSNPMDILPRMPPSGSFYSTQGVQAAPNFAFPGSVYTLQDHTILRALCENNGYKPERDMISVSQETGLTTDINAETSSNFDVGWRPFENHNHASVSVAPLDLDGLWNY* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0213 350 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Gso5g0213 350 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Gso5g0213 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 347 - -
Gso5g0213 350 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 7 347 - -
Gso5g0213 350 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Gso5g0213 350 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0213 Gso-Chr5 2215058 2216887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0213 14 350 NAC Transcription Factor Family AT5G07680 58.457 2.70e-134 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso5g0213 NAM 2.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0213 - - gmx:100798002 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0213 5 2215058 2216887 Gso17g0852 17 7995199 7996989 GST