Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0202 ATGGGGTGTGTGGTTGCGAAGCAGGCGGTGTCAGTGACGCCTGCAATTGAGCACTCGGTTGAGTCGGAGAAGAACAGGAAGAAGAAGACTGAGTCAGTGGGGGCAAGTAGGAGCGAGTTGGGTGAGTCGGGGAGAGCGAGTTCCAATGGTGGAAGTGAGTCTCTGAGCTTCAGGTTGGGAAACCTGAGCAAGTACGTGGAGGGAGAGCAGGCGGCGGCGGGATGGCCGGCGTGGCTCAGCGCCGTCGCGTGTGAGGCCATTCACGGTTGGGTGCCTCTCCGAGCTGACGCGTTTGAGAAACTTGATAAGATTGGGCAGGGTACATATAGCAGTGTTTTCCGAGCAAAGGAGATTCAGACCGGGAAGATAGTGGCTTTGAAGAAGGTGAGGTTCGACAATTTTGAGCCAGAGAGTGTGAGGTTTATGGCACGAGAAATAATGATTCTTAGAAGGCTTGATCATCCAAACATCATTAAATTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTGTTTGAGTACATGGAACACGACATCACAGGGCTCTTGGCTAGACCAGAAATCAAGTTTAGTGAATCACAGATCAAATGCTACATGAAACAGTTGTTATCTGGCATTGAGCATTGTCACTCGCGAGGTGTGATGCACCGGGACATCAAAGGATCAAATCTTTTGGTGAATAATGAAGGGATATTGAAGGTGGCAGATTTTGGATTGGCAAATTTCTCCAATTCTGGGAACAAGCAGCCCCTCACTAGTCGTGTTGTCACCTTATGGTACCGTCCTCCGGAACTTTTGCTCGGTTCAACAGCTTACGGTGCATCCGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAATTACTAATTGGGAAGCCTATACTTCAGGGGAGAACTGAGGTTGAGCAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCCGAAGAATACTGGAAAAAGACCAGACTTCCTCATGCAACATTGTTCAAGCCACAACAACCATATGATAGTTGCCTCCGAGAGACATTTAAAGATTTTCATGCATCCAGTGTAAATCTTCTACAAACTCTTCTTTCTGTCGAACCAAGCAAACGTGGGACTGCCTCCTCTGCTCTCTCATTGGAGTATTTCAAAACAAAACCTTATGCATGTGACCCATCAAGTTTACCAATATACCCGCCTAGCAAGGAGATTGATGCGAAGAATGAGGAAGAATCGAGAAGGAAAAAGATTGGTGGGCGAGCTTGCAGAGCAGAATCAAGAAAACCATCAAGAAATCCACTAGCACTCAGTAAATTAGCCCCAGCAGAGGATTTGTCAAGTCAAACTCAAACTTCCCAAAAGATGGATGATAGATCTGTCCACATCATTAAAGAAGAGAACACTAACACATGTGAGGAGGCACCAAAGCAGTCTAGTGGTAAACCAGAAGATGCTTCTTCTTATATGAAGAATGCATCTCAAGTAGATATTCCCTTTCCTGGACCATTGCAAGTTTCAAAATCAAGTGGCTTCGCATGGGCAAAAAGGCGTAGAGATGACACTTCAGTTAGATCCCACAGTCGGTCTATTTCTAGAGGATATATCTTTAATTCATCAGAAACTTCTACACTAAATTCAAGGAATAATTCTGAATCCAGAAACCATGAAAATAAGAAATTTTTCGGGGCACATGCCAATTCTAGGGGCCATGACCTACTTGAAATTTCTAAGCTTGCCATGCAAAATCAATGGAGTAAGTTTGATCGTCTAGATTCGTTTGATACTTGTGACGAATACCATTCACAAGAACTGTCCGTGGCACTTTATAACAGGCAAGATTCACTATCCAAGAGAAGTAACCTGAGTTACCAGGATCAAGCAGAAAAGGTAGAGTTTTCAGGGCCACTACTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGACACGAGAGTCATATCCGGCGTACGGTCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCAAGGGAAGTAA 2013 0.4481 MGCVVAKQAVSVTPAIEHSVESEKNRKKKTESVGASRSELGESGRASSNGGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVACEAIHGWVPLRADAFEKLDKIGQGTYSSVFRAKEIQTGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLARPEIKFSESQIKCYMKQLLSGIEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTAYGASVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKTRLPHATLFKPQQPYDSCLRETFKDFHASSVNLLQTLLSVEPSKRGTASSALSLEYFKTKPYACDPSSLPIYPPSKEIDAKNEEESRRKKIGGRACRAESRKPSRNPLALSKLAPAEDLSSQTQTSQKMDDRSVHIIKEENTNTCEEAPKQSSGKPEDASSYMKNASQVDIPFPGPLQVSKSSGFAWAKRRRDDTSVRSHSRSISRGYIFNSSETSTLNSRNNSESRNHENKKFFGAHANSRGHDLLEISKLAMQNQWSKFDRLDSFDTCDEYHSQELSVALYNRQDSLSKRSNLSYQDQAEKVEFSGPLLSQMHTVDELLERHESHIRRTVRRSWFQRGKKQGK* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0202 670 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Gso5g0202 670 Gene3D Phosphorylase Kinase; domain 1 85 180 - -
Gso5g0202 670 MobiDBLite consensus disorder prediction 17 53 - -
Gso5g0202 670 Pfam Protein kinase domain 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0202 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Gso5g0202 670 SUPERFAMILY Protein kinase-like (PK-like) 91 389 IPR011009 -
Gso5g0202 670 CDD STKc_CDK9_like 98 382 - -
Gso5g0202 670 MobiDBLite consensus disorder prediction 471 487 - -
Gso5g0202 670 MobiDBLite consensus disorder prediction 393 487 - -
Gso5g0202 670 MobiDBLite consensus disorder prediction 402 426 - -
Gso5g0202 670 PANTHER CELL DIVISION PROTEIN KINASE 30 663 - -
Gso5g0202 670 MobiDBLite consensus disorder prediction 456 470 - -
Gso5g0202 670 ProSiteProfiles Protein kinase domain profile. 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0202 670 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 30 663 - -
Gso5g0202 670 MobiDBLite consensus disorder prediction 19 35 - -
Gso5g0202 670 Gene3D Transferase(Phosphotransferase) domain 1 181 421 - -
Gso5g0202 670 MobiDBLite consensus disorder prediction 441 455 - -
Gso5g0202 670 SMART serkin_6 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0202 Gso-Chr5 2118799 2124420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0202 90 442 Core Cell Cycle Gene Families AT5G10270 49.051 2.07e-115 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso5g0202 Pkinase 3.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0202 - - gmx:100784406 1321.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0202 5 2118799 2124420 Gso17g0865 17 8094966 8101035 GST