Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0187 ATGGAAGGAGATCATCGAATTCATCAAGAATTGAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCTTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCATATAACCAACTTTTCATCTGAGATGAATGAAAAAGAAAAGCTTTCATCTTCACACAACAATGGTGGAGACAAGGATTCTGAAGCTGCTGCTGCAGCTAACACTGCTGGCTATGGTCTCAGAGAGAAACCCAAGAAGACTTGGAGAATCTCAGATTATTCAAGCGAAGACCCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGGGTTCCAGTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCATTCTGAGAAAGAGAGAGTTTCCAACAGCTTGGAAGATCAAGATTCTTGGACTAATGCTAAGGTGGTTATGGATAGCCAATCTGATAACGAAGCAACTGCTCCGAATAAGAGAAGAAGGTCCAAGAGAAGAACAAGGTACACGGTGGTTGCTTCTTCTGCAGCAGCAGCAGCAGCAACAACAACTTCTTCTGTTGTATCTTTTGCCAATCCTTCTTCTTCTCTCTCTGAGGCTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGAGTGGTCCTCATTCTGTTGCCGAGTCCTCTGACAATAACTCTGCTTATTTCGAAGCTCGATCTTCGGTTCGAACTAATTTGATCACCAAATTTGATCAAGCAAAACTGATCAAGCAAAGTGATAACAAGTGGGAGGTTGGCAATTCAGAAAATCCCAACTCAACCAGAGGTAAGAGTTCACAACTTTTGACGACTACTACTGCTACTACTATTACTACTGAGATTCCTGAAAATGGATTTAGAGTGAACAAAAATGGAGTTTCCAATAAAGGGTACGAAAAGGCCTACAAGTCTGAGCTTGAGTATGTATCGGCATTGGAGGATTCTGAAGGTGAACATAGGAGGAGCAGAAGAGTCAATGGAACAGAATCAGCTTTATCAAAGTCGGTTACAACTACTGGCAAAAAGTACAGCTCAATCAAGACAAAGTTTTCAGGTTCTGAATTGAAGTCAAATAAGAACTGGATGGACAAGGCTTCAGAAGCTGAATCTAGCAAGAACTCTAACAAGAGAGGCAAGTTTGAGTGTACCACTTGCAACAAAATTTTCCACTCATACCAAGCACTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAAGGATGCTTTGCTTCAAGGAATGAGAGCAGTGAGAACAGCATTGAAACTGATCTCTCTCCTGACCCAATAATAACTGAAAACAAGCTCATGAAGAACGGTGACAGTGAGTGTGTGGTGGAACATCAACATGGTGCTAGTTTTCATAATGAGGTGGAAACAGTTAATGAGTCCAAGAAGAGCAAGGGGCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGCCAAGCCTTGGGTGGCCATAAGAGATCTCATATGGTTGGTGGGTCTGAGAGTAGAAGCTTTCAAACAATTGTGCTTCAGGAACCAGTGGCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTGCTACTGAGGAAGAAAGCAATAGCCATGCTGACTCTAACAGTAACAGACCCTGGTGGATAGTAGAAGACAACCACAAACAGGAGGCACTGGTAGGCCTTATCTCATAG 1710 0.4363 MEGDHRIHQELKHACKFCGKCFPCGRSLGGHMRSHITNFSSEMNEKEKLSSSHNNGGDKDSEAAAAANTAGYGLREKPKKTWRISDYSSEDPLVFDKFCKECGKGFQSWKALFGHMKCHSEKERVSNSLEDQDSWTNAKVVMDSQSDNEATAPNKRRRSKRRTRYTVVASSAAAAAATTTSSVVSFANPSSSLSEAEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEARSSVRTNLITKFDQAKLIKQSDNKWEVGNSENPNSTRGKSSQLLTTTTATTITTEIPENGFRVNKNGVSNKGYEKAYKSELEYVSALEDSEGEHRRSRRVNGTESALSKSVTTTGKKYSSIKTKFSGSELKSNKNWMDKASEAESSKNSNKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIETDLSPDPIITENKLMKNGDSECVVEHQHGASFHNEVETVNESKKSKGHECPICLKVFPSGQALGGHKRSHMVGGSESRSFQTIVLQEPVAEIRDFLDLNLPAATEEESNSHADSNSNRPWWIVEDNHKQEALVGLIS* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0187 569 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 9 569 - -
Gso5g0187 569 MobiDBLite consensus disorder prediction 324 344 - -
Gso5g0187 569 Gene3D Classic Zinc Finger 388 502 - -
Gso5g0187 569 ProSiteProfiles Zinc finger C2H2 type domain profile. 391 418 IPR013087 -
Gso5g0187 569 ProSiteProfiles Zinc finger C2H2 type domain profile. 480 502 IPR013087 -
Gso5g0187 569 Pfam C2H2-type zinc finger 13 35 - -
Gso5g0187 569 Pfam C2H2-type zinc finger 391 415 - -
Gso5g0187 569 Pfam C2H2-type zinc finger 480 503 - -
Gso5g0187 569 Pfam C2H2-type zinc finger 99 121 - -
Gso5g0187 569 ProSitePatterns Zinc finger C2H2 type domain signature. 393 413 IPR013087 -
Gso5g0187 569 MobiDBLite consensus disorder prediction 261 281 - -
Gso5g0187 569 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Gso5g0187 569 MobiDBLite consensus disorder prediction 43 71 - -
Gso5g0187 569 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Gso5g0187 569 SUPERFAMILY beta-beta-alpha zinc fingers 98 123 IPR036236 -
Gso5g0187 569 MobiDBLite consensus disorder prediction 324 338 - -
Gso5g0187 569 ProSitePatterns Zinc finger C2H2 type domain signature. 482 502 IPR013087 -
Gso5g0187 569 MobiDBLite consensus disorder prediction 141 164 - -
Gso5g0187 569 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 35 IPR013087 -
Gso5g0187 569 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 9 569 - -
Gso5g0187 569 MobiDBLite consensus disorder prediction 371 387 - -
Gso5g0187 569 MobiDBLite consensus disorder prediction 368 387 - -
Gso5g0187 569 Gene3D Classic Zinc Finger 3 124 - -
Gso5g0187 569 SUPERFAMILY beta-beta-alpha zinc fingers 391 502 IPR036236 -
Gso5g0187 569 SMART c2h2final6 480 502 IPR013087 -
Gso5g0187 569 SMART c2h2final6 97 119 IPR013087 -
Gso5g0187 569 SMART c2h2final6 13 35 IPR013087 -
Gso5g0187 569 SMART c2h2final6 391 413 IPR013087 -
Gso5g0187 569 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0187 Gso-Chr5 1994519 1997043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0187 9 538 C2H2 Transcription Factor Family AT1G26610 35.283 7.87e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g0187 zf-C2H2_6 6.5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0187 - - gmx:102669916 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0187 5 1994519 1997043 Gso17g0651 17 6027312 6030129 GST