Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0175 ATGGCGGCGGCGGCGGCGGCAAAGCGTTGCCACTACGAAGTCCTCGGCCTCCCCCGCGACTGCGCCCCCGACGAGATCCGCTCCGCCTACCGCCGCCTCGCCCTGCAGCGCCACCCCGACAAGCTCGTGAAATCGGGTATCTCCCAAGAAGAAGCCACCGCGCAGTTCCAGGAACTCCAGCACGCCTACGAAGTCCTCTCCGACCCCAAGGAACGCGCCTGGTACGACTCCCACCGCTCCCAAATCCTCTTCTCCGACCCCAACACCGTCTCCAACTCCTTCGTCCCCGACCTCTTCTCCTTCTTCTCCAACACCGTCTATTCCGGCTACTCCGACACCGCAAAGGGATTCTACAAGGTCTATTCCGATGTATTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGTAAATTGGGGCTTGGTGTTGATGCGGTTAGACAGGCGCCTGTTATGGGGAACTTGGACAGCCCCTACGCGCAGGTTACCGCGTTTTATAGTTATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGCTGGGTGGATGAGTACGATGTTATGGCGGGGCCGAACCGGAAGTCGCGGCGGCTTATGGAGGAAGAGAATAATAAGGCGAGGAGGAAGGCGAGGAGGGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGGTGAAGAGGAGTGTCGAGGAGGAGAGGAAGAAGGAGGATGAAAGGGAGAGGAGGAGGAGGTTGGAGAAGGAGAGGAAGGAGAGGGCTATGGCGTATGAGGAGCCGGAGTGGGCTAAGGTTGAGGAGGATGAGGAGGAGGTGGTTGAGGAGGTGGAGGAGAGGGAGAATGAGAAGGAGTTTTATTGTGTGCTGTGTAAGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCCGAGTTCAGGGATTCGATTGGTGATGAGGAGGATTTGGAAGAAGAAGAAGAAGAAGAAGGAAAGGAGGGTTTGGAAAGTGAGGAGGATCAGGTTGGGGTGAATGATGAGATTGATAATGGGATTGGTGATTTGGAGGCAAGGATTAGGGATGGTGTTAATGTTGAAGAGGGGGAGACTAGGAATGGGATTGAACTGAATGATGGTGATGAGTTTTTTGATGCCTCACGTGTGAAGGAAGGGGAAGAGGCTAATGTGAAGGTTAATTTTCGTTATGATGGCAATGATGAAGATGATGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGGCACAAGAACAGAAAACCACGGGCTTCAGCACACAAACCCAAGGCTTCAGTAGCCCCGTCGCCAATTGAAAATGAGAATGATGAGCTTGGCTCTAAGGAATATAACAACCGGAAGGGCGCAAGAAAGAAACGTGGAGCCAAGAAAGAGAAGGGTCGGAAAAATTGGGAAGAATCTCAGGGGGCTGCTTCCAGTGGGGATTATGAGAATATAAACAGTAATGGAAATGATAATTCTCATGCAGAGGAGTCCTGTTCCCAACATTTTGTGGAAAATGAGGATAATGGTATAGAGAATGAGCAGGTTGGTAGAGATGACAAGATTTCTAATCAACCGGCTGATAAAAAAGGTAGAGATAAGAATATTTCTCATCAACCGGCTGATACAAAAGGAGCTGGCAAGGACACAAAAACTAAAGCAAAAGTTTCATCCAAAGGAAGAAAAGGAAAGGTGACATCAAAGAATGTTGGCAATATTTGTGAGGCGTGTGGAGAGGAGTTTGATTCAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACAATAAAAGGTCGATAA 1863 0.4922 MAAAAAAKRCHYEVLGLPRDCAPDEIRSAYRRLALQRHPDKLVKSGISQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNTVSNSFVPDLFSFFSNTVYSGYSDTAKGFYKVYSDVFDKIHANEINFARKLGLGVDAVRQAPVMGNLDSPYAQVTAFYSYWLGFCTVMDFCWVDEYDVMAGPNRKSRRLMEEENNKARRKARREYNDTVRRLGDFVKKRDKRVIDMKVKRSVEEERKKEDERERRRRLEKERKERAMAYEEPEWAKVEEDEEEVVEEVEERENEKEFYCVLCKKKFKSEKQWKNHEQSKKHKERVAEFRDSIGDEEDLEEEEEEEGKEGLESEEDQVGVNDEIDNGIGDLEARIRDGVNVEEGETRNGIELNDGDEFFDASRVKEGEEANVKVNFRYDGNDEDDENGVLEAMVAGHKNRKPRASAHKPKASVAPSPIENENDELGSKEYNNRKGARKKRGAKKEKGRKNWEESQGAASSGDYENINSNGNDNSHAEESCSQHFVENEDNGIENEQVGRDDKISNQPADKKGRDKNISHQPADTKGAGKDTKTKAKVSSKGRKGKVTSKNVGNICEACGEEFDSRNKLHKHLGDSGHATIKGR* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0175 620 SMART c2h2final6 590 614 IPR013087 -
Gso5g0175 620 SMART c2h2final6 295 319 IPR013087 -
Gso5g0175 620 ProSiteProfiles dnaJ domain profile. 10 79 IPR001623 -
Gso5g0175 620 SMART dnaj_3 9 71 IPR001623 -
Gso5g0175 620 Coils Coil 239 259 - -
Gso5g0175 620 MobiDBLite consensus disorder prediction 330 358 - -
Gso5g0175 620 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
Gso5g0175 620 MobiDBLite consensus disorder prediction 413 584 - -
Gso5g0175 620 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Gso5g0175 620 ProSiteProfiles Zinc finger C2H2 type domain profile. 590 619 IPR013087 -
Gso5g0175 620 ProSitePatterns Zinc finger C2H2 type domain signature. 592 614 IPR013087 -
Gso5g0175 620 MobiDBLite consensus disorder prediction 490 515 - -
Gso5g0175 620 CDD DnaJ 10 68 IPR001623 -
Gso5g0175 620 Gene3D Classic Zinc Finger 283 348 - -
Gso5g0175 620 Coils Coil 195 215 - -
Gso5g0175 620 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
Gso5g0175 620 ProSitePatterns Nt-dnaJ domain signature. 56 75 IPR018253 -
Gso5g0175 620 Gene3D DnaJ domain 2 92 IPR036869 -
Gso5g0175 620 MobiDBLite consensus disorder prediction 306 368 - -
Gso5g0175 620 MobiDBLite consensus disorder prediction 306 329 - -
Gso5g0175 620 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 4 620 IPR044648 -
Gso5g0175 620 PRINTS DnaJ domain signature 12 30 IPR001623 -
Gso5g0175 620 PRINTS DnaJ domain signature 30 45 IPR001623 -
Gso5g0175 620 PRINTS DnaJ domain signature 51 71 IPR001623 -
Gso5g0175 620 MobiDBLite consensus disorder prediction 516 574 - -
Gso5g0175 620 SUPERFAMILY beta-beta-alpha zinc fingers 288 336 IPR036236 -
Gso5g0175 620 SUPERFAMILY Chaperone J-domain 7 102 IPR036869 -
Gso5g0175 620 Pfam DnaJ domain 11 76 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0175 Gso-Chr5 1880419 1883827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0175 1 620 C2H2 Transcription Factor Family AT1G74250 49.924 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g0175 DnaJ 1.6e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0175 K09506 - gmx:100788305 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0175 5 1880419 1883827 Gso17g0660 17 6111916 6115131 GST