Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0171 ATGGCTTTCTTTGGTAGAATTGGGAATTTATTAAGACAGACAGCAAGCAGGCAGGTTAGTTCAGAATTGCGATCATCCCCTTCGTTTTTTCAGGCTATACGCAGTATGTCATCTGCTCCAAGCACAAAGCTGTTTATCGGAGGTGTTTCATATTCTACTGACGAGCAAAGTTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCTAGGATAATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTATTACATACACTTCGGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGTCAGGACCTACATGGTCGCCCGATTAGGGTGAATTATGCTAATGAAAGACCTCGTGGATATGGTGGCGGTGGCTTTGGTTCATACGGTGCTGTAGGTGGCGGTGGCTATGAAGGTGGTAGCAGCTATCGTGGTGGTTATGGTGGTGACAACTATAGTCGAAATGATGGGAGTGGTTATGGATATGGTGGAGGCAGGTATGGATCAGGCGGCAATTATGGGGACAGTGGCTCTGGCAATAACTATTCAGGAGGCTATGCTGGTAATGCCGGTGGTGTAGGCAATCATGAAAGCTCTACTGGTTTTGCCAGTAATGGATATGATGGAAGTGTTGTGGATGGTGGTGTTGGTGCAGGTAGTGGCACTAGCTTTGCTGATGGCTATGATGGAAGTGCGGGGTCTGAATTTGGCAGCAGTGGCCAATTAGATAGCAAAGCAAGCAGCAAAGGAGATGAGGATTTTGGTGATTACAGGGATGACAACGATGCAGATGATTTTGCCAAGAGGGCTTGA 825 0.4642 MAFFGRIGNLLRQTASRQVSSELRSSPSFFQAIRSMSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDLHGRPIRVNYANERPRGYGGGGFGSYGAVGGGGYEGGSSYRGGYGGDNYSRNDGSGYGYGGGRYGSGGNYGDSGSGNNYSGGYAGNAGGVGNHESSTGFASNGYDGSVVDGGVGAGSGTSFADGYDGSAGSEFGSSGQLDSKASSKGDEDFGDYRDDNDADDFAKRA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0171 274 MobiDBLite consensus disorder prediction 250 274 - -
Gso5g0171 274 CDD RRM_HP0827_like 43 119 - -
Gso5g0171 274 Gene3D - 13 156 IPR012677 -
Gso5g0171 274 PRINTS Eggshell protein signature 38 54 - -
Gso5g0171 274 PRINTS Eggshell protein signature 127 142 - -
Gso5g0171 274 PRINTS Eggshell protein signature 157 167 - -
Gso5g0171 274 PRINTS Eggshell protein signature 188 206 - -
Gso5g0171 274 SMART rrm1_1 43 116 IPR000504 GO:0003723
Gso5g0171 274 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 273 - -
Gso5g0171 274 MobiDBLite consensus disorder prediction 232 274 - -
Gso5g0171 274 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 273 - -
Gso5g0171 274 SUPERFAMILY RNA-binding domain, RBD 34 152 IPR035979 GO:0003676
Gso5g0171 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Gso5g0171 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0171 Gso-Chr5 1850746 1854333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0171 41 122 Eukaryotic Initiation Factors Gene Family AT4G34110 36.585 1.03e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0171 K12741 - gmx:100782808 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0171 5 1850746 1854333 Gso17g0663 17 6133429 6136602 GST