Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0163 ATGATGATTGAAAGTTCAGGTAAAGTTCATGAAGCCAAAAATCAACAAGAGGGTGATGATGATAACAACATTAAAATTGAGAAGCTCTTGAAGGCACGACCCTCCACCTCCTCATCATCAAGATCATGGTCAGCATTCAGAAATCCAAGAATTGTGAGAGTCTCACGTTCCTTGGGAAGCAAAGATAGGCACAGCAAGGTTTGCACCATTAGGGGACTGAGGGACAGAAGGATTAGACTTTCTGTTCCCACAGCAATTCAGTTATACAATCTTCAAGACAAGCTTGGATTCAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGCCACCAAATCTGATATTGACAAACTCCCACCACTTCAATTTCCTCACTGTTTTGCTCATCAGTTTCACCAGCAAACCCTACTGCCAGGTACCTCTCAGTTTTCTCTTGGAGGCTTCTATGATGCTGCTAATAACAACTCCACTTTTATTAAGGATGGGGGAAATCAAAACCGCCTCACGGCAACAAAGTCAACAAGGTATTGGGATATAGATTCACTAAATAATGGTAAGGAGTTAGCTGAAAGTGTGTCAATCTCCCAAAAAGGACAGTTCTGGATCAAAACAAATGAACAAGAAAACCATCAAGGTGGAGGAATTGGTGGTAGTAGTACTACTACTCATAATAGAGAGGATAATTCTTCAGTTCATTATAAGCTCTTCCCAATTGGGACAACTACTAATAACTCTTATTTACCTGGTTTGTTAAACAATGGCATGACACATAACTCCTACCACCATTCTGAGCCTTCAAGGCTATCTTTGTCCCACTTTGGAAGCCATGGATTGTTTCCTTCACATGATTCCCATCAAAGCAGTGGCATTGGTGTGCCATTTTCGTCTTCTAATTTCTCTGGAGCATCATCTGGTCCCCAATTGCTTTTTTGTCCAACTTCTGCTACACCATCTGCTTTTTACTCGGTGGAAAGTGATCCAAGACAATCCAACAACAATGTTCAGATCTTTAGCTCAAGTTCCCAAGTCATGAAGCGTCTTCCTCTCATCCAATCTCTTCATTCAACCAATTCACCTATTAGTCGGCGCCTTCCGACATCATTTAGCTCCAAGCTTCTTGATTCAGATAACAATGATCGTAGCCAACCAAATAAGGGTACTAGTTCTCGTTCTTGA 1176 0.415 MMIESSGKVHEAKNQQEGDDDNNIKIEKLLKARPSTSSSSRSWSAFRNPRIVRVSRSLGSKDRHSKVCTIRGLRDRRIRLSVPTAIQLYNLQDKLGFNQPSKVVDWLLEATKSDIDKLPPLQFPHCFAHQFHQQTLLPGTSQFSLGGFYDAANNNSTFIKDGGNQNRLTATKSTRYWDIDSLNNGKELAESVSISQKGQFWIKTNEQENHQGGGIGGSSTTTHNREDNSSVHYKLFPIGTTTNNSYLPGLLNNGMTHNSYHHSEPSRLSLSHFGSHGLFPSHDSHQSSGIGVPFSSSNFSGASSGPQLLFCPTSATPSAFYSVESDPRQSNNNVQIFSSSSQVMKRLPLIQSLHSTNSPISRRLPTSFSSKLLDSDNNDRSQPNKGTSSRS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0163 391 MobiDBLite consensus disorder prediction 1 24 - -
Gso5g0163 391 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 2 385 - -
Gso5g0163 391 Pfam TCP family transcription factor 60 152 IPR017887 -
Gso5g0163 391 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 385 IPR005333 GO:0003700
Gso5g0163 391 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Gso5g0163 391 MobiDBLite consensus disorder prediction 358 391 - -
Gso5g0163 391 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0163 Gso-Chr5 1777841 1780027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0163 11 212 TCP Transcription Factor Family AT5G60970 48.598 1.21e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso5g0163 TCP 8.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0163 - - gmx:102665855 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0163 5 1777841 1780027 Gso17g0675 17 6201669 6203815 GST
Gso5g0163 5 1777841 1780027 Gso4g1352 4 39285872 39288654 PCT
Gso4g1352 4 39285872 39288654 Gso5g0163 5 1777841 1780027 PCT