Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0156 ATGGAATCTTGGAGCTATGTCCCTGAAGAAAAGGAGTGTGTCTCCAATGAGGCACTCTCACCTCCCAACACTCTCGGGAGGAGTAAAAATTCTTTCTTGGGCTGGGAACTCAAAACCCCATGTGGTTTTTCCAACGACATGTTGGGTTTGGGTCACCACAGCATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCTGAAATGTTGGGAAAACACATGTCCGATGATCTAATTGGGAGTGTTCCAACCAGAAAGGTGAATGGTAATAGACAACAACAACACAGTGACAGAATCACTGGCACTGTTGTGGATGCCCCAAGTGGGTTTTCTCAAAGAGGGGACTCAAATTCAAAGCTTTCAAACTCAAATTCCCTCATTGATTTGAAGCTGGGTCGATTTGCTGACCATGGAGATTTCACTGATCGGGCGTTTTCCAAAGTTTTGTCTTCTTCTGAGTCATCAACGCCTCCTAAGAGAGTGAGAGCTTCAGGGTTGCACTCTCAGACTGCATATTGCCAAGTCTATGGCTGCAACAAGGATCTCAGCTCCTGCAAGGACTACCACAAGAGGCACAAGGTCTGTGAGGTTCACTCCAAGACTGCCATTGTTATAGTCAATGGCATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGGAGCTGCCGAAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAACCACAAATGGGTATTCACCCAGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGATAGCAGATTCCAGGGATCCATGCTAACTTCATCTTTTATCTGCCCAGAGATGCTTCCAAGTGGGGTCACGTGTTCTGAGAAATATGGTATGAGTGACTTTTGGAGACCTATCAAAGCAGAACACGGGACTGGTTTTAGGAATCTTTCCTCTATGGCTGCAACCAATGGACATCCTCCATCAAGATCTTTATTTCCATCATATAACGGAAATCAATTTCCTTTTCTTCATGAAAACAGTGCTACATCCACCACAGGAAGCATCTTCTGTGAGAGCAATAGCCCCTATCCATCTGCCCTTGGGGCCCAAAATTCTGGGTTGAGACCACTATTCCAGGACACTGTAGGAAATGAGAACTTCAATGTTTTTGATACCTCATCAACTGTTCAAGGATTGTCGGGGATTTCAGACTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCTTGGCTCACTCCTTGGTTATTCCAAGCAGTCATAGCCATAACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTCTTCAAGCCGAGTGTCAGATAGTTTTCCATCAGAACTAAATCATGCAGATGGAAGTCATCTCAGTCCTGTATTAATATCAGACAATAATTGTATTGTAAACTTTGATATGGCAGATGGTATCTTCCAAGCTTCAGATTACTTGAATGTAAAAGATCATCTTTCCGGTGAAGATGGTGCAACCATTGACTTACTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAATCCTTGCAGGTGAAGCAAGAGAATGATTCTTCTTGCACTCTGCGGATTACATAA 1650 0.44 MESWSYVPEEKECVSNEALSPPNTLGRSKNSFLGWELKTPCGFSNDMLGLGHHSIENQGFEELGFPEMLGKHMSDDLIGSVPTRKVNGNRQQQHSDRITGTVVDAPSGFSQRGDSNSKLSNSNSLIDLKLGRFADHGDFTDRAFSKVLSSSESSTPPKRVRASGLHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRFQGSMLTSSFICPEMLPSGVTCSEKYGMSDFWRPIKAEHGTGFRNLSSMAATNGHPPSRSLFPSYNGNQFPFLHENSATSTTGSIFCESNSPYPSALGAQNSGLRPLFQDTVGNENFNVFDTSSTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLAHSLVIPSSHSHNYNMSQVSEKIGISSQTSSSRVSDSFPSELNHADGSHLSPVLISDNNCIVNFDMADGIFQASDYLNVKDHLSGEDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0156 549 SUPERFAMILY SBT domain 170 249 IPR036893 GO:0003677|GO:0005634
Gso5g0156 549 MobiDBLite consensus disorder prediction 1 20 - -
Gso5g0156 549 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Gso5g0156 549 PANTHER 1 PROTEIN, PUTATIVE-RELATED 42 549 - -
Gso5g0156 549 MobiDBLite consensus disorder prediction 236 255 - -
Gso5g0156 549 Gene3D - 163 233 IPR036893 GO:0003677|GO:0005634
Gso5g0156 549 Pfam SBP domain 172 245 IPR004333 GO:0003677
Gso5g0156 549 Coils Coil 517 537 - -
Gso5g0156 549 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 549 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0156 Gso-Chr5 1689321 1694764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0156 126 286 SBP-box Gene Family AT1G69170 57.764 4.75e-55 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso5g0156 SBP 5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0156 - - gmx:100817547 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0156 5 1689321 1694764 Gso17g0683 17 6277550 6282866 GST