Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0155 ATGGGAAGGGGGAGAGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTCACATTTGCTAAGAGAAGAAATGGGTTGCTCAAGAAGGCTTATGAGCTCTCAGTACTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCAGCAGCACCTCAAGTATGATGAAAACACTGGAGAAGTACCAGAAGTACAGCTACAGTGCACTGGAGACCACCCGACCAATTAACGACACTCAGAACTATCAGGAGTATTTGAGATTAAAAGCAAGGGTAGAAGTTTTGCAACGTTCTCAAAGGAACCTACTCGGGGAAGATCTTGCCCAAATGAATACAAATGAGCTAGAGCAGCTTGAGAATCAACTGGAGGCAGCACTGAGGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTTCTGATCTTCACCACCGGGAAACATTGCTTATTGAAACTAATAACGTGTTAAGGAGTAAGTTGGAAGAAACTGATCACTCACAAGTTCAAGTAAGTCTAGCTTTGGAAGCTGGAGGGCCTAGCATCCAATACACCAACTTTCCACCTCAATCAGAGGGGTTCTTCGAGCCAGTGGGAGTGAACCCCACCTTGCAAATTGGGTACAACCAGACTGGTCCTGATGATACAAACGTAGGAGCTTCATCCTTAAGTATGCATGGATTCGCCTCTGGGTGGATGCTTTGA 732 0.4495 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKYSYSALETTRPINDTQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTNELEQLENQLEAALRNIRSTKTQFMLDQLSDLHHRETLLIETNNVLRSKLEETDHSQVQVSLALEAGGPSIQYTNFPPQSEGFFEPVGVNPTLQIGYNQTGPDDTNVGASSLSMHGFASGWML* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0155 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso5g0155 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Gso5g0155 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gso5g0155 243 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso5g0155 243 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 229 - -
Gso5g0155 243 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gso5g0155 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso5g0155 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso5g0155 243 Coils Coil 116 143 - -
Gso5g0155 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso5g0155 243 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Gso5g0155 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso5g0155 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso5g0155 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso5g0155 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0155 Gso-Chr5 1657663 1663361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0155 1 243 MADS-box Gene Family AT5G15800 54.198 5.46e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso5g0155 K-box 7.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0155 K09264 - gmx:100797819 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0155 5 1657663 1663361 Gso17g0684 17 6310948 6316852 GST