Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0154 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACGTTCTCAAAGAGAAGGTCTGGTTTGCTGAAGAAAGCGCGCGAGATCTCTGTGCTGTGCGATGCTGATGTGGCTCTCATCGTCTTCTCCACCAAAGGCAAGCTTTTGGACTACTCCAACCAACCTTGGAATTTTATGGGAGAAGATCTGGACAGCTTAAATCTTAGAGGACTTCAGAGTTTGGAGCAACAACTTGATTCCGCTCTCAAACACATTAGATCACGAAAGAACCAAGCCATGAATGAATCTATTTCTGAGCTTCAGAAAAAGGATAGGACACTCCGTGAACACAACAACTTGCTCTCCAAGAAGATAAAGGAAAAAGAGAAGGAGCTGACCCCACAAGAGCAAGAAGGACTGCAAAATAACATGGATGTGAGCTCTGTCCTTGTAACTCAACCACTGGAGTCCCTGACTATTGGAGGCTCCCCAGAAGTCAAATCTAATGAAGAAACTCCAACCTCATGTCGACCTAAAACCATTCTTCCCCCTTTGATGCCTCTTCCTACAAATGAATAG 576 0.4514 MGRGRVELKRIENKINRQVTFSKRRSGLLKKAREISVLCDADVALIVFSTKGKLLDYSNQPWNFMGEDLDSLNLRGLQSLEQQLDSALKHIRSRKNQAMNESISELQKKDRTLREHNNLLSKKIKEKEKELTPQEQEGLQNNMDVSSVLVTQPLESLTIGGSPEVKSNEETPTSCRPKTILPPLMPLPTNE* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0154 191 Coils Coil 77 97 - -
Gso5g0154 191 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Gso5g0154 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso5g0154 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso5g0154 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso5g0154 191 CDD MADS_MEF2_like 2 59 IPR033896 GO:0000977|GO:0045944
Gso5g0154 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Gso5g0154 191 MobiDBLite consensus disorder prediction 156 175 - -
Gso5g0154 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso5g0154 191 ProSiteProfiles K-box domain profile. 40 130 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso5g0154 191 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Gso5g0154 191 Pfam K-box region 63 124 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso5g0154 191 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 1 60 - -
Gso5g0154 191 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 63 163 - -
Gso5g0154 191 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso5g0154 191 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso5g0154 191 MobiDBLite consensus disorder prediction 156 191 - -
Gso5g0154 191 PANTHER MADS BOX PROTEIN 63 163 - -
Gso5g0154 191 PANTHER MADS BOX PROTEIN 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0154 Gso-Chr5 1641847 1651806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0154 1 155 MADS-box Gene Family AT1G26310 46.829 9.53e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso5g0154 K-box 2.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0154 K09264 K09260 gmx:100798351 339.347