Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0145 ATGGAGCTTCCTCAAGCATGCCCCCTTGGAACCGAAGGGAGGAAACCGACCCATGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCCACCTTCTCAAGGAAGTTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGGTAGAAACGAAAGCCAGTGCCAAGGAAGAAGCCACAGATGAAATATCATCGGTGGTTCAAAAGCCACGTTCACCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTATAGTATTAGCCACATTTCATATGTTAATAATAATAATAATAATAATCAAAGGGTTCCAAAACCAGAGACATCATCCCTTTACGGGCGTCAAGCAACTAGTACGGATAGGAATGAAGAAAACTCTAACTGCAGTTCATATACTTCAAGTGGTTTCACTTTGTGGGAAGAGTCGTCGGGGAAGAGGGGAAAGACAGGAAAGGAGAATAATGCGGGCGAGAAACCCTCTCTAGGAGAGTCTGCAGCAAAGCTAGGGCAGTGGACAACAACGGAGCGGACGTCACAGTCATTTTCCAACAATCGTCACGGCAGCTTCAGCTCTCGCTCTTCGTCTCAGACAACTGGGCTGAAAAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAGGGATAGTGCACAGAATGAAGTGCTAGAAAGCGAGGAAACATTTTTTCTCAAGAAAGAACCCTCCTCGAACACCCAAAGAGCAGAACTGCTTGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTGGAGGTCATTGAATATATTCATTTTTTGCAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCCAGAAAGATTGATGCCATGGAGAAATAATGACAAGCCAGCAGAAAGTTTTCAACCTCGTGGCACCGATAATGGGTCAAGTCCATCACCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGCACAGCAACTACCTCCAAGACAATGGATCATCAGGCTGGAAAAATGAACAAGGCTTTTCCAATTCCTATTCCTTCACAGCTAAATTTCTTCACTCCAACCCAAATCGGTGGTCCAGGTGGAGTAGTGTCTCAGCTCACACATAGATCGGCATCTGATGCTGAGAACACCAAATATCAACCTTCAGTGGAATGTCAGACTATGACTGCTACCAATGAAAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGCGTGTACTCAAAAGGGTTGTTACATACGCTTACACACGCATTGCAGAGTTCAGGGGTGGACTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGATCAAATGTACCAGTGTCAGTGTGTGGTGCTAAGGATGGTGCAGTTCCTTCTAACAATCAAAAGATGATGCGCTCTAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAGTTAAGAAGCTAAAGACTTGCAGAAGTTAA 1647 0.4432 MELPQACPLGTEGRKPTHDFLSLYSNSTAQQDPRPPSQGSYLKTHDFLQPLERVETKASAKEEATDEISSVVQKPRSPSVEHLLPGGIGTYSISHISYVNNNNNNNQRVPKPETSSLYGRQATSTDRNEENSNCSSYTSSGFTLWEESSGKRGKTGKENNAGEKPSLGESAAKLGQWTTTERTSQSFSNNRHGSFSSRSSSQTTGLKNQSFIEMMKSARDSAQNEVLESEETFFLKKEPSSNTQRAELLVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEPERLMPWRNNDKPAESFQPRGTDNGSSPSPTIPGSTQNVESGLSTATTSKTMDHQAGKMNKAFPIPIPSQLNFFTPTQIGGPGGVVSQLTHRSASDAENTKYQPSVECQTMTATNEKLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRSNVPVSVCGAKDGAVPSNNQKMMRSRVASSGKSDQAVKKLKTCRS* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0145 548 MobiDBLite consensus disorder prediction 102 146 - -
Gso5g0145 548 MobiDBLite consensus disorder prediction 1 42 - -
Gso5g0145 548 MobiDBLite consensus disorder prediction 521 539 - -
Gso5g0145 548 Gene3D - 261 333 IPR036638 GO:0046983
Gso5g0145 548 MobiDBLite consensus disorder prediction 517 548 - -
Gso5g0145 548 MobiDBLite consensus disorder prediction 332 379 - -
Gso5g0145 548 MobiDBLite consensus disorder prediction 172 206 - -
Gso5g0145 548 MobiDBLite consensus disorder prediction 102 206 - -
Gso5g0145 548 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 334 IPR036638 GO:0046983
Gso5g0145 548 PANTHER TRANSCRIPTION FACTOR BIM1 1 545 - -
Gso5g0145 548 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 545 IPR044295 GO:0003700|GO:0006351|GO:0046983
Gso5g0145 548 Coils Coil 212 232 - -
Gso5g0145 548 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 313 IPR011598 GO:0046983
Gso5g0145 548 MobiDBLite consensus disorder prediction 20 42 - -
Gso5g0145 548 MobiDBLite consensus disorder prediction 251 279 - -
Gso5g0145 548 CDD bHLH_AtBIM_like 262 338 - -
Gso5g0145 548 Pfam Helix-loop-helix DNA-binding domain 265 314 IPR011598 GO:0046983
Gso5g0145 548 MobiDBLite consensus disorder prediction 56 78 - -
Gso5g0145 548 SMART finulus 269 319 IPR011598 GO:0046983
Gso5g0145 548 MobiDBLite consensus disorder prediction 245 279 - -
Gso5g0145 548 MobiDBLite consensus disorder prediction 345 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0145 Gso-Chr5 1559864 1568908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0145 1 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 49.423 1.63e-128 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g0145 HLH 4.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0145 - - gmx:100800999 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0145 5 1559864 1568908 Gso17g0692 17 6402412 6411135 GST