Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0142 ATGGCAGATGTAACCACCTACCTCCGCCACCACCGCGACCCCGACCCCGACCCCGACGACGACGACCAAACCCTAATTCCATTCCCTTATTGGGATTTGGACTTTGATTTCGACCCCGAATTCCCCACAAACACTTTCTCCTTCACCGACCGCGAAAACCAGATCAATTTCGTCATGGATCTCTTCCACCAGCGCGTGGAGCAGTCTCAACTCACCGATCCCCTCTCCAACGACGCCGTTTTCGGCGTCATCGACGGAATCGACTTAGGTTTCCCCGCCGCCGACGACTTCTTCATCGGACGGAGATTCTCCGTCGGATCCGACGAATCCGACGGAGGACACTCTCACTCGCACGCGGGGATTGACGACGGTGTCCTGGGGTTCTGCGCGCATTCCGACGAAGACTACAACGAAAACGACGACGTTGCGAGCATCCCTCTCTGCTGGGACGCGCTTCAATTGGAAGACAACAACAACAACTACGATGACTTCGAGTGGGAGGAAGTGATAGACGAGAGAGACGTTCTCAGCATGCTCGACGACACCGTTTCCGTTAACCTCGGAATCGAAGCAGAAGCAGCAGCAGCAGCAGCAGAAGAAGAAGAAGCAGAATCAGAAGCCAGCATTTTGGAGTGGCAAGTTTTATTGAACTCCAACAATTTGGAAGGACCAAATTCGGAGCCTTATTTCGGAGACAACGAGGATTTCGTTTACACCGCGGACTACGAGATGATGCTCGGGCAATTCAACGACGATGCGTTTAATGGGAAGCCTCCGGCCTCCGCCTCCGTCGTGAGGAATCTTCCGTCGGTGGTTGTGACCGAAGCTGACGTCGTTTGCGCGGTTTGTAAAGACGAGTTTGGCGTTGGGGAAGGGGTGAAGGTGTTGCCGTGTTCGCATCGTTACCATGAGGACTGCATTGTGCCGTGGTTGGGGATAAGAAACACGTGTCCCGTTTGTCGCTATGAGTTCCCCACTGATGATGCTGATTATGAGCGGAGGAAGGCGCAGAGATCTGTTGTTATGTGA 1029 0.5394 MADVTTYLRHHRDPDPDPDDDDQTLIPFPYWDLDFDFDPEFPTNTFSFTDRENQINFVMDLFHQRVEQSQLTDPLSNDAVFGVIDGIDLGFPAADDFFIGRRFSVGSDESDGGHSHSHAGIDDGVLGFCAHSDEDYNENDDVASIPLCWDALQLEDNNNNYDDFEWEEVIDERDVLSMLDDTVSVNLGIEAEAAAAAAEEEEAESEASILEWQVLLNSNNLEGPNSEPYFGDNEDFVYTADYEMMLGQFNDDAFNGKPPASASVVRNLPSVVVTEADVVCAVCKDEFGVGEGVKVLPCSHRYHEDCIVPWLGIRNTCPVCRYEFPTDDADYERRKAQRSVVM* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0142 342 PANTHER - 15 77 - -
Gso5g0142 342 PANTHER - 94 340 - -
Gso5g0142 342 SUPERFAMILY RING/U-box 274 327 - -
Gso5g0142 342 ProSiteProfiles Zinc finger RING-type profile. 280 321 IPR001841 -
Gso5g0142 342 Coils Coil 186 206 - -
Gso5g0142 342 MobiDBLite consensus disorder prediction 1 22 - -
Gso5g0142 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 327 IPR013083 -
Gso5g0142 342 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 77 - -
Gso5g0142 342 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 94 340 - -
Gso5g0142 342 SMART ring_2 280 320 IPR001841 -
Gso5g0142 342 MobiDBLite consensus disorder prediction 1 18 - -
Gso5g0142 342 Pfam Ring finger domain 280 321 IPR001841 -
Gso5g0142 342 CDD RING-H2_RNF126_like 280 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0142 Gso-Chr5 1531389 1532889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0142 143 327 C3H Transcription Factor Family AT5G60820 47.196 5.22e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0142 - - gmx:100794303 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0142 5 1531389 1532889 Gso17g0695 17 6435289 6436867 GST