Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0134 ATGGCACAAGATACTGTTTCTGGAGTTGACTCGCCTCGGGGACGTCTATTACGAGATCAGGTTCAAGTGGTTAAAAAAAAGGATTCTGATCGCTATGAAATTGTTCCTATCCAAGATTCTTTGTCATTTGAGAAAGGATTCTTCATATTTATCCGTGCATGCCAGTTGTTGGCTCAAAAGAATGATGGAATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACCGAGAAGGTCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGACAATTATAATGATTCTAGTAGAATTATTGATGGAAACTTCGATGACCCTCGGTTGACAGATTATGATACCCTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTGGCTCTCGTATTGTAATCATAGAAGGCATCTATGCCTTAAGTGAAAAATTACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGATCTTGTCAAGCGTGTTTTGCGGGACATTCATCGTGCCGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTGTATCCTATGTATAAAGCTTTTATCGAGCCAGATCTCCAAACAGCCCATTTAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTTCAGAATCCCACCTACATATTGAAGTCAGCAAGAACTGTGACAGTTGATCAAATAAAGGCAGTTATTGCTGCAGAGCATACTGAAACTAAAGAGGAAACATATGACATATTTCTTCTACCCCCTGGGGAAGACCCCGAAGCTTGTCAATCATATTTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAAGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTGCAGCTATTCTGAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACATATGTTCAGGTGCAAGGGAAAGACAGAAACTATTGCAAATTTTTTGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTGTAAACGATGTGATGGCATTGCCAGATGATCTTAAGACAAAACTCAGCATAGATGATGACTTGGTTTCAAGCCCCAAAGAAGCCCTTTCCAGAGCTTCTGCAGATAGGAGAATGAAGTATCTTAATCGCGGTATTTCACAATCCTATTCAACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTTGATGGAAGAGCACTAGAATCCCCTGCACCAATTGCTAACCAAGGAGTCATCACTCAACTTTCTGATCAAATTTCAACATTAAATGAAAGAATGGATGAATTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTCGCTATCAGAAAAGATTCAGCAGGCAGTCAACAAAACTTGGCTTTACAGGCTGAGGCCTGCAATGGCTCAGGCCCCACTTCCTTCTTTGTAACTGGACGAGGCAATGGTTCATTGACTGGATCATTGCTACCTAATTCATCATCATCTTCTCAGTTGGCTAAAGAGTCTCCCCTGATGGAAGAGGTATTAGTGATTGCACGAGGACAACGTCAAATCATGCATCAACTAGACACTCTGAGCAATCTTTTGCATGAATACTTTGGAGAAAGGTCACGCCTGGGAAGACCAGACCATACAGGAAGAATGCGTGAAGCTGAATCCGTCGCCGTCCCCCTGCTTCTGACTCTGGCCATTGGTGCTGTTGGTGTGCTTTTGTTCAGAGGTTTGACATCCCAAAAATAA 1983 0.413 MAQDTVSGVDSPRGRLLRDQVQVVKKKDSDRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPIYDFKSSSRIGYRTVEVPGSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHLKIINKFNPFSGFQNPTYILKSARTVTVDQIKAVIAAEHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVTIKTDWLEQLNRTYVQVQGKDRNYCKFFAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRMKYLNRGISQSYSTQRDKILPKLTKLAINNRRFDGRALESPAPIANQGVITQLSDQISTLNERMDEFTSRIEELNSKFAIRKDSAGSQQNLALQAEACNGSGPTSFFVTGRGNGSLTGSLLPNSSSSSQLAKESPLMEEVLVIARGQRQIMHQLDTLSNLLHEYFGERSRLGRPDHTGRMREAESVAVPLLLTLAIGAVGVLLFRGLTSQK* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0134 660 Coils Coil 499 526 - -
Gso5g0134 660 Pfam Phosphoribulokinase / Uridine kinase family 67 235 IPR006083 GO:0005524|GO:0016301
Gso5g0134 660 Gene3D - 253 407 - -
Gso5g0134 660 ProSiteProfiles CYTH domain profile. 247 409 IPR023577 -
Gso5g0134 660 Pfam CYTH domain 270 403 IPR023577 -
Gso5g0134 660 Gene3D - 65 245 IPR027417 -
Gso5g0134 660 PRINTS Uridine kinase signature 64 81 - -
Gso5g0134 660 PRINTS Uridine kinase signature 131 146 - -
Gso5g0134 660 PRINTS Uridine kinase signature 187 197 - -
Gso5g0134 660 PRINTS Uridine kinase signature 223 236 - -
Gso5g0134 660 PANTHER URIDINE KINASE 13 648 - -
Gso5g0134 660 CDD UMPK_like 66 238 - -
Gso5g0134 660 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 13 648 - -
Gso5g0134 660 SUPERFAMILY CYTH-like phosphatases 259 406 IPR033469 -
Gso5g0134 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 235 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0134 Gso-Chr5 1477933 1486980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0134 66 320 PRT Gene Family AT5G40870 25.379 7.78e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0134 K00876 - gmx:100803122 1270.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1853 7 41336834 41350489 Gso5g0134 5 1477933 1486980 PCT