Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0133 ATGGGGAGTGACAGCGAGGCAGAGAAGGAGAAGAAGAAGATGCTTGCGCTCGCTCCCATTGCTAAACCCCTTGCCGGAAAGAAGCTTTGCAAGCGAACCCTAAAACTTGTTCGTAGAGCTGCCGAACACAAATGCCTGAAAAGAGGAGTGAAGGAGGTTGTTAAAAGCATAAGGAGAGGTCATAAAGGATTGTGTGTGATAGCTGGGAACATATCGCCGATTGATGTCATCACTCATCTTCCTATTCTCTGTGAAGACTCTGACATTCCTTATATTTATGTCCCATCTAAAGAAGATCTTGCAGGCGCAGGAGCAACAAAGAGGCCTACATGCTGTGTTCTGGTACAGACAAAGCCTGTAAAGGGTGAAATTGAGCGAGGGGAACAAGAGAAACTAAAGTCAGATTATGATCAAGTTGTGTCGGAAGTAACTGAGCTTACAACTTCACTATTTTAA 456 0.4452 MGSDSEAEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHLPILCEDSDIPYIYVPSKEDLAGAGATKRPTCCVLVQTKPVKGEIERGEQEKLKSDYDQVVSEVTELTTSLF* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0133 151 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 34 117 IPR004038 -
Gso5g0133 151 PRINTS Ribosomal protein L7A/RS6 family signature 46 60 IPR018492 -
Gso5g0133 151 PRINTS Ribosomal protein L7A/RS6 family signature 65 78 IPR018492 -
Gso5g0133 151 PRINTS Ribosomal protein L7A/RS6 family signature 81 91 IPR018492 -
Gso5g0133 151 PRINTS Ribosomal protein L7A/RS6 family signature 91 105 IPR018492 -
Gso5g0133 151 PRINTS High mobility group-like nuclear protein signature 19 32 IPR002415 GO:0003723|GO:0005730
Gso5g0133 151 PRINTS High mobility group-like nuclear protein signature 32 47 IPR002415 GO:0003723|GO:0005730
Gso5g0133 151 PRINTS High mobility group-like nuclear protein signature 49 59 IPR002415 GO:0003723|GO:0005730
Gso5g0133 151 PRINTS High mobility group-like nuclear protein signature 93 105 IPR002415 GO:0003723|GO:0005730
Gso5g0133 151 PANTHER - 3 150 - -
Gso5g0133 151 SUPERFAMILY L30e-like 12 119 IPR029064 -
Gso5g0133 151 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 3 150 - -
Gso5g0133 151 Gene3D - 11 147 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0133 Gso-Chr5 1475161 1477008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0133 46 118 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 31.507 1.66e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0133 K11129 - gmx:100804186 292.352