Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0127 ATGGAAAACATAGACCCCTCAAAATTTTCACACCAATCTCAAAACCAAAACAAGAATAATCTTCCCTTGATGCCTATTGAAATAGACAAGTCCTATAAGAAGAGAGCCATAAAGGTTCCAAAAGTAGCAAACAAGAGTGAGAAAAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGATGGATTGCTGAGATCAAGGACTCCTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAGGCTGCCCTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCATGGAACCATGAACACTCATGAAGAAGATTGCAGCCTTTTGGGTAAGAATCCAAGGGCCTACCAACTTCTTAAGCATGCAGTCATGAAGAACCATGCACTTTCATCATCGCTTTATTCCACAGTCGTGCCTTGGAAAAACCAGATCATGATGAGAGACGAGTTTGACTCCCTTGTTGAGGAAACTATAGTTTGTTCCATTCCTGAACAAGGTTCTGGGTGTTGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGCTTCCTAA 615 0.413 MENIDPSKFSHQSQNQNKNNLPLMPIEIDKSYKKRAIKVPKVANKSEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAALAYDCAARLLRGRNAKTNFPNHGTMNTHEEDCSLLGKNPRAYQLLKHAVMKNHALSSSLYSTVVPWKNQIMMRDEFDSLVEETIVCSIPEQGSGCCGISFGSSKVYSSVVVAPSFSAS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0127 204 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Gso5g0127 204 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Gso5g0127 204 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Gso5g0127 204 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Gso5g0127 204 MobiDBLite consensus disorder prediction 1 22 - -
Gso5g0127 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 204 - -
Gso5g0127 204 CDD AP2 48 108 IPR001471 GO:0003700|GO:0006355
Gso5g0127 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 1 204 - -
Gso5g0127 204 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Gso5g0127 204 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Gso5g0127 204 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0127 Gso-Chr5 1435090 1435974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0127 49 108 AP2-EREBP Transcription Factor Family AT5G19790 73.333 4.49e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso5g0127 AP2 2.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0127 - K09286 gmx:100807374 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0127 5 1435090 1435974 Gso17g1047 17 9925020 9926059 GST