Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0125 ATGGCTGGGGGGAGAAGGAGGAGGCACCACTTCAGCAGAATCCATGCATTCACGTGTGGGAGAGCTTCTATGAAAGAGGAGCATTCACTAATAGGAGGCCCTGGCTTCTCAAGGAAAGTCTATTGCAATGACCCTGAACATGCCACAGCGAGTCTTCTCAATTATGGTGACAATTATGTCAGAACAACTAAGTATACATTGGCCACGTTCCTCCCCAAGTCCTTGTTTGAGCAGTTCAGGAGGGTTGCCAATTTCTACTTCCTCGTTTGTGCAGTTTTGTCTTTCTTTCCGGTGTCTCCTTACTCAGGCATCAGTAACGTTGTCCCTCTACTGGTTGTGGTTGCCGCCACAATGGTCAAAGAGTTCATTGAGGATTTTAGTAGGAAAAAACAGGATATAGAGATGAATAACAGAAAAGTTAAACTGCATCGTGGAGGTGGTGTTTTTGACTATTCTAAATGGAGGGATTTGAAAGTAGGAGATGTAGTGAGGGTGGAAAAAGATGAATTTTTTCCTGCTGATCTCATCTTACTTGCATCAAACTACGATGATGCAATTTGCTATGTTGAGACCATGAATCTTGATGGCGAGACAAATCTGAAACTGAAACAAGCACTGGAAGCAACTTCAAAGTTGCATGAAGACTCAAACTTTCAGAATTTCAGGGCTGTCATCAAATGTGAAGATCCAAATGCAAATTTGTACACATTTGTTGGTAGTATGGAGCTCGAGGATCAACAGTACCCTCTTGCACCTCAACAGCTACTGCTTAGGGACTCTAAGCTGAGGAACACAGATTTTGTTTATGGCGTGGTAATATTTACTGGACATGATACAAAGGTTATGCAGAATGCAACAGATCCTCCATCCAAGAGAAGCAAAATTGAGAAAAGGATGGATAAGATTATCTACTGCCTCTTCTTTGTACTTATTTTAATTTCTTTCATTGGGTCCATATTCTTTGGGATTGCAACAAATGATGACCTTGAAAATGGAAGAATGAAGAGATGGTACCTTAGACCAGATGATACCGAAATTTACTATGATCCAAATGAACCAGTAGCTGCAGCAATTCTGCATTTCTTCACAGCACTTATGTTGTATGGTTACTTGATTCCAATTTCCTTATATGTATCCATTGAAATTGTAAAGGTTCTTCAAAGCGTTTTCATCAACCAGGATGTGCACATGTATTATGAGGAAACTGACAAGCCAGCACATGCTCGTACATCAAATTTGAATGAAGAACTTGGCCAAGTTGATACCATACTTTCAGATAAGACAGGAACTTTGACTTGCAATTCTATGGAATTCATTAAGTGTTCTATAGCTGGGGTTGCTTATGGACAAAGAGTTACAGAAGTTGAGAGAGCTCTATCTGGGAGACATGAATCACATCCAGGCCAAGTGTTGGAAAAGATCAGTGAATCAAAGTCATCCATTAAAGGGTTTAACTTTATGGATGAAAGGGTCATGAATGGAAATTGGATCAAAGAACCCAATGCCAATGTAATCCAGAATTTCCTACAGTTGCTGGCTGTATGCCATACTGCAATACCTGAAGTTGATGAAGAAACAGGTAAGGTTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATAGCAGCCAGGGAACTTGGATTTGAATTTTATGAAAGGACACATACAACTATTTCACTGCATGAATTGGACCCCATATCAGGCCAGAAAATCAACAGGTCCTACAAACTTTTGAATATATTAGAGTTTACCAGTGCAAGAAAGCGGATGTCTGTAATTGTGAGAGATGCGGAGGGAAAACTATTGCTACTTAGCAAAGGGGCTGACAGTGTAATGTTTGAACGAATTGCAAAGAATGGAAGGGATTTTGAAGAGAAAACAAAGCAGCACATTAGTGAATATGCTGATTCTGGTTTGAGGACCTTGATACTTGCATATCGTGAACTTAATGAGGAAGAGTACAATAAATTTAGTAAAGAGTTTACAGAGGCCAAGAACTTAGTAAGTGAAGACCAGGAGCAGATTGTTGAGGGGATAGTACAAAATATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTACAAGATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCTGGGATTAAGCTATGGGTTTTAACTGGTGATAAAATGGAGACAGCAATTAATATTGGATTTGCTTGTAGTTTACTTAGACAAGGAATGAAACAAATTATAATTAGCTCAGATACTCCAGAAACTAAGTCATTGGAGAAAATGGAGGACAAGTCTGCTGCTGAAGCGGCGATTAAATCAAGTGTTCTTCGTCAACTAAGGGAGGCAAAAGCATTACTTTCGACATCAGATGAAAACTATGAGGCCTTAGCCCTGATCATTGATGGGAAGTCTCTTACTTATGCACTAGAAGATGATGTAAAGGACTTGTTTCTTGAACTTGCCATTGGCTGTGCATCTGTTATCTGCTGTCGTTCATCTCCCAAACAGAAAGCACTTGTTACAAGACTGGTGAAGATGAGAACTGGTAGTACAACACTAGCTATCGGAGATGGGGCAAATGATGTTGGAATGCTCCAAGAAGCAGACATTGGAATTGGTATCAGTGGCGTGGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCAATAGCCCAATTTCGGTTTCTAGAGCGCTTACTTCTTGTGCATGGACATTGGTGTTACAGAAGGATTTCATCAATGATCTGCTATTTCTTTTACAAGAATATTGCCTTTGGCTTCACTCTGTTCTTCTTTGAGATTTATGCCTCATTCTCAGGGCAAGCTGCATACAATGATTGGTTCATGTCGCTGTACAATGTATTCTTCACTTCACTTCCTGTAATTGCATTGGGAGTGTTTGATCAGGATGTCTCTTCTAAATTATGTCTCAAGTTTCCATTATTATATCAAGAAGGCGTCCAAAACATCCTATTTAGCTGGAAACGGATCATCGGTTGGGCATTGAATGGAGTTGTGACTTCTGCCATCGTATTCTTCTTTTGCATCCGTAGTATGGAATACCAGGCATTCCGTAAAGGCGGTGAAGTCATGGGGCTGGAAGTTCTTGGTGCCACCATGTACACCTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTACATACAACATATATTCATCTGGGGAAGCATTCTATTCTGGTATATATTCCTCCTGGCATATGGAGCCATAGACCCTTCCTTCTCAACCACAGCCTATAAGGTCTTCATTGAAGCTCTTGCACCAGCCCCATTTTTCTGGATCATAACTTTGCTCATTCTGATTGCTTCCCTCCTTCCCTATTTCATCTATGCTTCCATCCAAATGCGTTTCTTCCCTATGTATCACCAAATGATTCAGTGGATGAGAAACGACAGGCAAACAAGTGATCCAGAATACTGTAATGTGGTAAGGCAGCGATCGATTAGACACACAACAGTTGGATTCACAGCTCGTTTGGAAGCATCCAAACGTTTTGAAGCATCCAGAAGAGTTGAAGCATTCAATCCTTTTGAAGCTTCCAAACGTTCCCAAGGGAAGTCTGAGGACAGATAG 3618 0.4074 MAGGRRRRHHFSRIHAFTCGRASMKEEHSLIGGPGFSRKVYCNDPEHATASLLNYGDNYVRTTKYTLATFLPKSLFEQFRRVANFYFLVCAVLSFFPVSPYSGISNVVPLLVVVAATMVKEFIEDFSRKKQDIEMNNRKVKLHRGGGVFDYSKWRDLKVGDVVRVEKDEFFPADLILLASNYDDAICYVETMNLDGETNLKLKQALEATSKLHEDSNFQNFRAVIKCEDPNANLYTFVGSMELEDQQYPLAPQQLLLRDSKLRNTDFVYGVVIFTGHDTKVMQNATDPPSKRSKIEKRMDKIIYCLFFVLILISFIGSIFFGIATNDDLENGRMKRWYLRPDDTEIYYDPNEPVAAAILHFFTALMLYGYLIPISLYVSIEIVKVLQSVFINQDVHMYYEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGQRVTEVERALSGRHESHPGQVLEKISESKSSIKGFNFMDERVMNGNWIKEPNANVIQNFLQLLAVCHTAIPEVDEETGKVSYEAESPDEAAFVIAARELGFEFYERTHTTISLHELDPISGQKINRSYKLLNILEFTSARKRMSVIVRDAEGKLLLLSKGADSVMFERIAKNGRDFEEKTKQHISEYADSGLRTLILAYRELNEEEYNKFSKEFTEAKNLVSEDQEQIVEGIVQNIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPETKSLEKMEDKSAAEAAIKSSVLRQLREAKALLSTSDENYEALALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKALVTRLVKMRTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEIYASFSGQAAYNDWFMSLYNVFFTSLPVIALGVFDQDVSSKLCLKFPLLYQEGVQNILFSWKRIIGWALNGVVTSAIVFFFCIRSMEYQAFRKGGEVMGLEVLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGSILFWYIFLLAYGAIDPSFSTTAYKVFIEALAPAPFFWIITLLILIASLLPYFIYASIQMRFFPMYHQMIQWMRNDRQTSDPEYCNVVRQRSIRHTTVGFTARLEASKRFEASRRVEAFNPFEASKRSQGKSEDR* 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0125 1205 CDD P-type_ATPase_APLT_Dnf-like 57 1016 - -
Gso5g0125 1205 Pfam Phospholipid-translocating P-type ATPase C-terminal 884 1134 IPR032630 -
Gso5g0125 1205 Gene3D - 118 286 - -
Gso5g0125 1205 SFLD C1.7: P-type atpase like 406 907 - -
Gso5g0125 1205 SUPERFAMILY HAD-like 419 911 IPR036412 -
Gso5g0125 1205 SUPERFAMILY Calcium ATPase, transmembrane domain M 46 1134 IPR023298 -
Gso5g0125 1205 Pfam Phospholipid-translocating ATPase N-terminal 40 105 IPR032631 -
Gso5g0125 1205 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Gso5g0125 1205 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 693 IPR023299 GO:0000166
Gso5g0125 1205 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 822 939 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso5g0125 1205 Gene3D - 537 670 IPR023299 GO:0000166
Gso5g0125 1205 SUPERFAMILY Calcium ATPase, transduction domain A 139 285 IPR008250 -
Gso5g0125 1205 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1179 - -
Gso5g0125 1205 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1179 - -
Gso5g0125 1205 Pfam Cation transport ATPase (P-type) 515 617 - -
Gso5g0125 1205 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1141 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Gso5g0125 1205 Gene3D - 688 896 IPR023214 -
Gso5g0125 1205 SFLD p-type atpase 406 907 IPR044492 -
Gso5g0125 1205 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Gso5g0125 1205 PRINTS P-type cation-transporting ATPase superfamily signature 742 752 - -
Gso5g0125 1205 PRINTS P-type cation-transporting ATPase superfamily signature 856 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0125 Gso-Chr5 1411771 1418917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0125 10 1182 Primary Pumps ATPases AT3G25610 69.864 0.0 1769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0125 K01530 K14802 gmx:100796405 2361.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0125 5 1411771 1418917 Gso17g1045 17 9899676 9906188 GST