Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0120 ATGGCAGAAACAGAAGACACCCTTCAAGCCTCGCCTATGAACGAAACAGAGAAGAAGATGAAGAAGAATAATAAGAAGAGCGACAAAAAAAGATCTCGGGATATTGCTACAGAGGAGCGTCCAGAGGAAGAGGAGAATGAGAATAATACAGATAGCGATGGAGAATCCTCGAAGAAGAAGAAGAAGAAGGTGGAAGGAGAAAGTGAAGTGGAAGAGAAAAAGGTGAAGAACAACGGTGGCTCTGGAATTATGAGCACCGAGTCATTTGAATCTCTGGGATTGTCTGAACCTACTTATAAAGCCATTATGGATATGGGATTCCACCACATGACTCAGATTCAAGCGAGGGCAATTCCGCCACTTTTGATTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGGAAAACTCTTGCCTTCTTAATTCCTGCTCTGGAGCTGTTGTACAATGTTAAGTTTACGCCTCGTAATGGAGCTGGTGTTATTGTTATATGCCCAACTAGAGAGCTTGCAATACAGACGCATGCTGTGGCCAAGGAGCTGCTCAAGTATCATTCTCAAACTCTTGGATTAGTTATTGGAGGTTCAGCTAGAAAAATTGAAGCTGAACGCCTTGCTAAAGGGATAAATTTATTGGTAGGAACTCCTGGTCGTCTTCTAGATCATCTTCAAAACACAAAAGGATTCATGTATAAAAACTTGAAGTGTCTCATGATTGATGAAGCTGACAGGATTTTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATCAAGATCCTTCCAAAGAATAGGCAAACAGCTTTATTTTCGGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGGTTGTCATTTCAGACAACTCCTATCTATATTGACGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCTTCAGGGTTATGTCGTGGTTCCCTGTGCCAAGCGCTTTATTGTTCTCTATTCCTTTTTGAAGAGACACCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGACATTCTTAATCTTATTCAATTGAATTGCTCGAGTATTCATGGAAAACAAAAGCAGCAGACCCGAACAACTACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGTGAAGGTGGGAAAGGAAATGCTTTGCTTTTCCTCATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCTGTTAAAGAGTATGCATATGATGAAAAGAAGGTGGCAAACGTACAATCTCACCTGGAGAATTTGGTGGTCAACAATTTCTATTTGAACAAGATGGCAAAAGAAGCTTATAGATCATACATATTAGCTTACAATTCTCATTCTATGAAGGATATATTCAATGTTCACCGTCTTGATTTGCAGGCTGTTGCGTCTTCGTTCAGTTTTTCAAACCCACCAAATGTGAGTCTGAACATAAACAGTAGCAAGCAAAGGAATAAAATGCGTAAAGTTGATGGAAGTAGACATGGATTCAATGACAACAATCCTTATGGAAAGAAAAATGCTGATGATAAGCGGCAGTTTGTGAGGCACTAG 1719 0.4119 MAETEDTLQASPMNETEKKMKKNNKKSDKKRSRDIATEERPEEEENENNTDSDGESSKKKKKKVEGESEVEEKKVKNNGGSGIMSTESFESLGLSEPTYKAIMDMGFHHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPALELLYNVKFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSARKIEAERLAKGINLLVGTPGRLLDHLQNTKGFMYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIQLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDLQAVASSFSFSNPPNVSLNINSSKQRNKMRKVDGSRHGFNDNNPYGKKNADDKRQFVRH* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0120 572 Pfam Domain of unknown function (DUF4217) 469 529 IPR025313 -
Gso5g0120 572 MobiDBLite consensus disorder prediction 1 89 - -
Gso5g0120 572 MobiDBLite consensus disorder prediction 51 76 - -
Gso5g0120 572 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 56 566 - -
Gso5g0120 572 SMART DUF4217_3 468 531 IPR025313 -
Gso5g0120 572 MobiDBLite consensus disorder prediction 532 572 - -
Gso5g0120 572 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 239 247 IPR000629 -
Gso5g0120 572 PANTHER RNA HELICASE 56 566 - -
Gso5g0120 572 Gene3D - 308 549 IPR027417 -
Gso5g0120 572 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 87 115 IPR014014 GO:0003724
Gso5g0120 572 CDD DEADc_DDX18 98 295 IPR044773 GO:0003724|GO:0005524
Gso5g0120 572 Pfam DEAD/DEAH box helicase 111 282 IPR011545 GO:0003676|GO:0005524
Gso5g0120 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 442 IPR027417 -
Gso5g0120 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 467 IPR001650 -
Gso5g0120 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 295 IPR027417 -
Gso5g0120 572 Pfam Helicase conserved C-terminal domain 323 427 IPR001650 -
Gso5g0120 572 SMART helicmild6 347 428 IPR001650 -
Gso5g0120 572 CDD SF2_C_DEAD 308 438 - -
Gso5g0120 572 Gene3D - 30 297 IPR027417 -
Gso5g0120 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 293 IPR014001 -
Gso5g0120 572 SMART ultradead3 106 311 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0120 Gso-Chr5 1357761 1363302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0120 87 446 Eukaryotic Initiation Factors Gene Family AT3G13920 31.868 1.62e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0120 K13179 - gmx:100798885 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0120 5 1357761 1363302 Gso17g1040 17 9843024 9849001 GST