Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0107 ATGTATTCCTCAAATACCTCCCTCAACGGCAATGAACTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTAATTCTTCAAAAGAAGAAACCAATTCGAATTACGCCCTTCCTCTTCCTCCTCCTCCTCCTCTTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCAGGAACACCACCATGACTTCCTCCTACTTCACCACTCTCTAGCTGACTCTGGAGTACTCACCAAAAACCTTGACGTTGCGGCCGAAATCTCGCCAATTCCTTGCCCTGGAGAAGGCTCAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGATCGCCACAGCAAGATCAACACCGCACGGGGCCTCAGAGATCGAAGAATGAGGTTGTCCCTCGAAGTCGCGAAGCGGTTTTTTGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGATTGGTTACTAAACCAAGCAAAGGGTGAAATCAAACAACTTGGAAGGGAAAAAACAAGTGTTGGTGGTGCGAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGGAGTTAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGAAGAGAAGAACAAACAAGGTTTGTAGAAAGAGTGCATTCAATCCTATTGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCAAGAGAAAGAACAAGAGAGAAGATGAGAACTCGGAGAGTACTTGCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACTCATCAAAGCCAAAGCGTGAACCATCCCTCCTTGGATGTGCACCTTCCTGAGGCTGATCAAGAACCAAGTTCTCACAACGCGAAGGAGCATTGGGGAGAGAACATGGCGCATGAAGATAATTCTTTGGCGATCATGAACAAGTGGAGCCCAACTATGATGTTCAATTCTCTTCACAACTCAGGAGTCCTTCAGGAACATCAATTTGCAGAATTTCAGTCCTTGGGCAAACCTTGGGAAGCCTACAGCAATCACATCTAA 1131 0.4642 MYSSNTSLNGNELISYPNQPFCFRPFSFESNPTNSSKEETNSNYALPLPPPPPLLSFFQSPFDENIFQEHHHDFLLLHHSLADSGVLTKNLDVAAEISPIPCPGEGSIAMEHTPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKGEIKQLGREKTSVGGAKSASSTSECEGVSSLDEVVVSGGVNEEQERETVPNMKRRTNKVCRKSAFNPIDKESREKARERARERTREKMRTRRVLADASNLNRLSSWNPFETVEDSAGTTHQSQSVNHPSLDVHLPEADQEPSSHNAKEHWGENMAHEDNSLAIMNKWSPTMMFNSLHNSGVLQEHQFAEFQSLGKPWEAYSNHI* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0107 376 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 347 IPR005333 GO:0003700
Gso5g0107 376 MobiDBLite consensus disorder prediction 236 261 - -
Gso5g0107 376 MobiDBLite consensus disorder prediction 186 200 - -
Gso5g0107 376 MobiDBLite consensus disorder prediction 104 125 - -
Gso5g0107 376 MobiDBLite consensus disorder prediction 307 326 - -
Gso5g0107 376 ProSiteProfiles R domain profile. 242 259 IPR017888 -
Gso5g0107 376 MobiDBLite consensus disorder prediction 183 202 - -
Gso5g0107 376 ProSiteProfiles TCP domain profile. 120 178 IPR017887 -
Gso5g0107 376 Pfam TCP family transcription factor 119 262 IPR017887 -
Gso5g0107 376 PANTHER TRANSCRIPTION FACTOR TCP18 15 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0107 Gso-Chr5 1227068 1229257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0107 52 189 TCP Transcription Factor Family AT1G68800 42.683 6.94e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso5g0107 TCP 4.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0107 - - gmx:100803669 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0107 5 1227068 1229257 Gso17g1027 17 9718910 9720839 GST