Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0106 ATGAGCTGGCGCAGGGTATTGAATTCAGCACAGGCCTTGGCTGCACACACTTTCCTTTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCTCTTCTTCTTGGTGGGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAATTGGGCTCCATGCCATGCCGTTGTTGCAACACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGATCGTGGCTATGCTGCAGTTGGTCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGATGGAGAAAACATGAGTGATGAGGCTATATGGGAAACTCTTCCTCATTTTTGGGTTGCTATCTCTATGGTGTTCTTCGTTGCTGCTACAGTCTTCACACTCCTAAAGCTTAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTGTTTATTAATTTTATTATTGCCGAGTGCTTTGCTTTCCTTGTATGTACAAAGTGGTCCAATCCCGTCATTCATAGAAATTCAAGAGAAGCTAGTAGTTCATCTTCAACTACGATTGGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACAGACGAAAATCAACCCCAGGGGAGAATCTGTAGCCTTCAAGACATAGGAGGTCATTTCATGAAAATACCAATTATTGTATTCCAGGTTCTTCTTTGTATGCATCTAGAGGGAACACCTGCTTGTGCTGTATATATACCGCTTCCAGTTATTTTCTCTCCCCTTTTCCTACTGCAAGGAGCTGGTGTACTGTTATCTGCATCTAAATTAGGGGAGAAGCTTGTGCTTCTGCTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCAAGAGCTCATGATTGCTTGGGGTTCTTGTGCCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACATGCACGACTATACCATGAGGGAGCAATTGGGTATAATACATTTAGTGGTTATCCTCCTGAGATCGTTAAGAAAATGCCAAAAAAAGAACTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAAACAGAAATTACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAACGTTGTATTGCTCCCATGTAGGCATCGTGTCCTTTGCAGATGGGTTCGTGCCAGGAACTGTTTCTTCGTTCCTAACTCCTATATTCAGTGTTCCGGAGAAAGCTTTCAAGTGTTATAG 1401 0.4218 MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHNLSSSWWVIFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESLYDRGYAAVGLKIVFLPLLTFEIIILIDNFRMCKALMPGDGENMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGDVGALGWWDLFINFIIAECFAFLVCTKWSNPVIHRNSREASSSSSTTIGYLDWNSGLVVSTDENQPQGRICSLQDIGGHFMKIPIIVFQVLLCMHLEGTPACAVYIPLPVIFSPLFLLQGAGVLLSASKLGEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLCHGSRLLGWWSIDEGSREEHARLYHEGAIGYNTFSGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRICFEGEINVVLLPCRHRVLCRWVRARNCFFVPNSYIQCSGESFQVL* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0106 466 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 444 - -
Gso5g0106 466 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 444 - -
Gso5g0106 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 459 IPR013083 -
Gso5g0106 466 Pfam Transmembrane Fragile-X-F protein 28 291 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0106 Gso-Chr5 1197016 1212400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0106 1 441 C3H Transcription Factor Family AT1G73950 72.789 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0106 - - gmx:100791390 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0106 5 1197016 1212400 Gso17g1024 17 9675451 9683867 GST