Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0105 ATGTCATCAAGTGGAACCATTTGGAGCTATGATGAAGAAAAAGCATTTGAGAATGCCATAGCTATGCATTGGATTGAGGAATCCTCAAAAGAGCAATGGGAGAAAATTGCTTCAGCAGTTCCCAGCAAAAGCATGGAAGAAGTGAAGCAACATTACCAGGTTCTTGTAGAGGATGTAAGTGCAATAGAGGCAGGTCACATATCATTCCCAAACTATGCTTCTGATGAAACCACATCTTCAAATAAGGACTTTCATGGCTCTTCCAAGGCGACAAGCTCAGATAAAAGATCAAATTGTAATTATGGAAGTGGTTTTTCTGGGTTAGGACTTGACTCCACCACTCATAGTAGTGGTAAAGGAGGCTTGTCAAGGTCATCAGAACAAGAAAGAAGAAAAGGAATTCCATGGACTGAGGAGGAGCACAGGTTATTTTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATATCTAGGACTCCCACTCAAGTGGCAAGCCATGCACAAAAGTACTTCATAAGGTTGAATTCTATGAATAGAGACAGGAGGAGGTCTAGTATTCATGATATCACTAGTGTGAACAATGGAGATGTAGCTAGTAGCCAAGCACCAATTACAGGGCTGCATAGTAGCACAATTTCTTCAAACACAATGGGTGTAGGACAATCCCTTAAGCATAGAGTTCAGGGTCACATACCACCTGGTTTAGGCATGTATGGAACACCAGTTGGGCATCCTGTGGCTGCTCCTCCAGGGCACATGGCATCTGCAGTTGGCACTCCTGTCATGCTTCCTCCTGGACCCCACCCCCATCCCCATCCCCATCACCATGCCCATCCTCATCCACCTTATGTTCTTCCTCTTGCTTACCCAATGGCACCTCCAACAATGCATCAATAA 924 0.4405 MSSSGTIWSYDEEKAFENAIAMHWIEESSKEQWEKIASAVPSKSMEEVKQHYQVLVEDVSAIEAGHISFPNYASDETTSSNKDFHGSSKATSSDKRSNCNYGSGFSGLGLDSTTHSSGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASSQAPITGLHSSTISSNTMGVGQSLKHRVQGHIPPGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHPHPHHHAHPHPPYVLPLAYPMAPPTMHQ* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0105 307 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Gso5g0105 307 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Gso5g0105 307 ProSiteProfiles SANT domain profile. 3 52 IPR017884 -
Gso5g0105 307 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Gso5g0105 307 MobiDBLite consensus disorder prediction 75 96 - -
Gso5g0105 307 PANTHER TRANSCRIPTION FACTOR KUA1 1 306 - -
Gso5g0105 307 Gene3D - 1 69 - -
Gso5g0105 307 SMART sant 132 182 IPR001005 -
Gso5g0105 307 SMART sant 4 58 IPR001005 -
Gso5g0105 307 CDD SANT 8 56 IPR001005 -
Gso5g0105 307 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Gso5g0105 307 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Gso5g0105 307 Gene3D - 134 186 - -
Gso5g0105 307 PANTHER TRANSCRIPTION FACTOR MYBS1 1 306 - -
Gso5g0105 307 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Gso5g0105 307 CDD SANT 135 180 IPR001005 -
Gso5g0105 307 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Gso5g0105 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Gso5g0105 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
Gso5g0105 307 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0105 Gso-Chr5 1192638 1194288 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso5g0105 Myb_DNA-binding 4.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0105 - - gmx:100812196 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0105 5 1192638 1194288 Gso17g1022 17 9660839 9662438 GST