Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0096 ATGTCTCAGTTCAAGTGGGAAGCCGATAAAATGTTAGATTTGTATATTCACGATTATCTCATGAAGAGACAGTTACATGCTACCGCAAGAACATTTCAGGCTGAAGGAAATGTTTCAACGAATCCTATTGCTATAGATGCACCTGGTGGTTTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCATGGTAAATCAGAAGCACCCAGAAGCAGCAGTTTCTTGCAGTAAGAATCAACAAATTAAGGCTCGACTAATGCAGAATCAACAGGAGCAAGAGCTTCAGAATACAAACCAGAATCAACAAAATGAACAAATGCAACTCTTATTGCAAAGACATGCTTGGCGGCAGCAGCAGCAGCAGCAATTTCTGCGTGGATTTCATCTTATTAGTGGTAGTGCTAGATGTCCTATTAGCAATGATCCTTTGATGAGACAGAACCTGGCAACTTCTAATGCTATGGCAACAAAAACATATGAAGACAGGTTGAAGCTTCCACTTCAGAAAGATGCTTTAGATGATGCAAACATTCAGCAAAAAGTAGTTGATGATGTTGGTCAGCTTCTAAACCCAAACCATGCCTCATTGTTGAAAGCAGCAGTAACAACTGGTGAACAGGCTAGAGGACAGATATTGCTCAGTGCACCTAGCATTTTACAGGGGGATATTCAAAATGTTCAAAATCTGAACCAGAAACTTCCAGGGTCTACACAAGACATAAAAAGTGATATGAATGCAATGATGAGGTCTCAAGCAGTTGTTTCAGAAGGATCCTTTATCGGTTGTCATGGTTCAAATCAAGGTGGTAGCAATTTGACTCAGAAAGGATGGCCTCTAGAAGGACTGGATGAGCTTCGCTCGGGATTTCTCCAGCCAAATAATTTAATGCAGTCTTCACAATCTTTCAGTCAACTTTCTCTACGGCAGCAACTTATGCTTCAGGCACAACAAAATTTGATTTCTCCTTCTGCCAGTGATTTTGAGAGCAGAAGACCCAGGATGCTTGTTAATGATCAAAACATGGCTCTTTTGAAAGATGGCCAATCAAATTCTGTAGGTGATTTAATTCCCAATAACAGGTCACCTGCTCAAGTTTGTTCCTCAGTGTTGCCCCATCCAGACTCAGATATGTACCTTAAGCAACAAATTCAAAAGAGCAGTCAGCAGCTTCAACAATATTCACAGCACCCTCTTTTGAGCCATCAATCTGAGTCTCTCCAGAAGCAAGGAAAAGATGGTCCTGGAAGCATTACAGTAGAGGGCAGTGTGTCCAATACCTTACAAGGAAACAAACAGGTTTCCAAAAGTATAACAGGGCAAAAGCGAAAACCAGCATCATCTTCAGATCCTGCCAATAGCTCTGGAACTGCAAACACTACAGGACCACCTACCAATTCACCTTCAACAGCATCTACACAAACACCCGCAGACATGATGACAGTGTCAACTCTGCATCAGAATGTTCCTTCCTCTAAGTCGTCATTTATGTTTGGTACTGATGGTTTTGGATCACTTTCATCAGTGCAGAATCAATTGGCTGATATGGATCACCTTGGGGGTGATGGATGTTTTGGTGACAATGTCGAGTCATTCTTATCTCTCGATGAATCAGATGTTAGCGAAAAAGTTGGCAAAGAAGTCGCATTCAAGAATATGAAGCATATAATGGCAAGTTCGCATAAAGTTGAGTGTTGTCACTTCTCATCAGATGGAAAACTTCTTGCTACAGGTGGCCATGATAACAAGGCTTCTTTGTGGTGCACAGAATTGTTTAACCTGAAATCAACACTTGAAGAGCACAGTGAATGGATAAGTGATGTTCGATTTTGTCCAAGCATGTTGCGTGTTGCTACATCCTCAGCAGATAAAACTGTTAGGGTTTGGGATGTTGATAATCCAAGTTATTCTCTTCGAACATTCACAGGACATGCAACAACTGTGATGTCACTAGATTTTCACCCTAGCCAAGATGACCTTATTTGCTCTTGTGACAATAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTCTCAAGGGTGGTGCAACTCAGATGAGATTTCAACCTGGCTTGGGAAGGCTTCTTGCAGCTGCAGTGGATAATTCCGTATCCATTTTTGATGTGGAAACCCAGGGTTGCAGACTTAAATTACAGGGCCATACTACTGTTGTCCGATCTGTGTGTTGGGATTTGTATGGAAATTTTTTGGCTTCTCTTAGTGCTGATATGGTTAGAGTATGGCGTGTTGTGTCTGGTGGCAAAGGGGAATGCATTCACGAGTTGAACGCATCCAGGAACAAATTCAACACCTGTGTTTTCCATCCCTTCTATCCTTTGCTGGTCATTGGCTGCCATGAGACTCTTGTGCTGTGGGACTTTGGTGAGAAGAAGACAGTGACTCTGCATGCACATGACGATGTTGTATCTTCCTTGGCGATGTCTAAAGTTACTGGGTTGGTGGCTTCAACTAGTCATGACAAGCATTTCAAGATCTGGAAGTGTGGCTAG 2529 0.4199 MSQFKWEADKMLDLYIHDYLMKRQLHATARTFQAEGNVSTNPIAIDAPGGFLFEWWSVFWDIYIAMVNQKHPEAAVSCSKNQQIKARLMQNQQEQELQNTNQNQQNEQMQLLLQRHAWRQQQQQQFLRGFHLISGSARCPISNDPLMRQNLATSNAMATKTYEDRLKLPLQKDALDDANIQQKVVDDVGQLLNPNHASLLKAAVTTGEQARGQILLSAPSILQGDIQNVQNLNQKLPGSTQDIKSDMNAMMRSQAVVSEGSFIGCHGSNQGGSNLTQKGWPLEGLDELRSGFLQPNNLMQSSQSFSQLSLRQQLMLQAQQNLISPSASDFESRRPRMLVNDQNMALLKDGQSNSVGDLIPNNRSPAQVCSSVLPHPDSDMYLKQQIQKSSQQLQQYSQHPLLSHQSESLQKQGKDGPGSITVEGSVSNTLQGNKQVSKSITGQKRKPASSSDPANSSGTANTTGPPTNSPSTASTQTPADMMTVSTLHQNVPSSKSSFMFGTDGFGSLSSVQNQLADMDHLGGDGCFGDNVESFLSLDESDVSEKVGKEVAFKNMKHIMASSHKVECCHFSSDGKLLATGGHDNKASLWCTELFNLKSTLEEHSEWISDVRFCPSMLRVATSSADKTVRVWDVDNPSYSLRTFTGHATTVMSLDFHPSQDDLICSCDNSEIRYWSIKNGSCTGVLKGGATQMRFQPGLGRLLAAAVDNSVSIFDVETQGCRLKLQGHTTVVRSVCWDLYGNFLASLSADMVRVWRVVSGGKGECIHELNASRNKFNTCVFHPFYPLLVIGCHETLVLWDFGEKKTVTLHAHDDVVSSLAMSKVTGLVASTSHDKHFKIWKCG* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0096 842 Gene3D - 537 689 IPR015943 GO:0005515
Gso5g0096 842 Gene3D - 690 842 IPR015943 GO:0005515
Gso5g0096 842 SMART WD40_4 678 714 IPR001680 GO:0005515
Gso5g0096 842 SMART WD40_4 761 799 IPR001680 GO:0005515
Gso5g0096 842 SMART WD40_4 801 840 IPR001680 GO:0005515
Gso5g0096 842 SMART WD40_4 717 755 IPR001680 GO:0005515
Gso5g0096 842 SMART WD40_4 593 632 IPR001680 GO:0005515
Gso5g0096 842 SMART WD40_4 636 675 IPR001680 GO:0005515
Gso5g0096 842 SMART WD40_4 551 590 IPR001680 GO:0005515
Gso5g0096 842 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 840 IPR044716 GO:0003714
Gso5g0096 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 600 641 IPR001680 GO:0005515
Gso5g0096 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 643 684 IPR001680 GO:0005515
Gso5g0096 842 SUPERFAMILY WD40 repeat-like 553 840 IPR036322 GO:0005515
Gso5g0096 842 PANTHER LISH-SSDP-WD40 1 840 - -
Gso5g0096 842 MobiDBLite consensus disorder prediction 385 477 - -
Gso5g0096 842 ProSitePatterns Trp-Asp (WD) repeats signature. 619 633 IPR019775 -
Gso5g0096 842 Pfam LisH 10 36 IPR006594 GO:0005515
Gso5g0096 842 Pfam WD domain, G-beta repeat 640 675 IPR001680 GO:0005515
Gso5g0096 842 Pfam WD domain, G-beta repeat 805 840 IPR001680 GO:0005515
Gso5g0096 842 Pfam WD domain, G-beta repeat 596 632 IPR001680 GO:0005515
Gso5g0096 842 Pfam WD domain, G-beta repeat 561 589 IPR001680 GO:0005515
Gso5g0096 842 Pfam WD domain, G-beta repeat 720 754 IPR001680 GO:0005515
Gso5g0096 842 Coils Coil 85 114 - -
Gso5g0096 842 SMART Lish 8 40 IPR006594 GO:0005515
Gso5g0096 842 CDD WD40 554 840 - -
Gso5g0096 842 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 643 680 - -
Gso5g0096 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 589 IPR001680 GO:0005515
Gso5g0096 842 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gso5g0096 842 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 600 635 - -
Gso5g0096 842 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 808 842 - -
Gso5g0096 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 808 842 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0096 Gso-Chr5 1053307 1062758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0096 637 839 Miscellaneous Gene Families AT5G08390 25.714 1.25e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso5g0096 WD40 0.051 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0096 - - gmx:100806326 1564.67