Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0094 ATGGCGTTGTTCATTACTGTTGTCGTGTTCCTGCTGCATCTGAGTTGGAGTGTCCGAGTTAACTCTGAGCCGACTCAGGACAAGCAAGCCCTCCTTGCTTTCCTCTCCCAGACCCCACACTCGAACCGCCTCCAATGGAACGCCTCGGAATCCGCGTGCGACTGGGTTGGCGTGAAATGCGACGCGTCACGCTCCTTCGTTTACTCGCTCCGTTTACCCGCCGTCGATTTAGTGGGTCGGGTCCCACCCGCCTCGCTCGGCCGCTTAACCCAGCTTCGTATCCTCAGCCTCCGCTCCAACGCCCTCACCGGCGAGATCCCTTCCGATTTCTCCAACCTCACCTTCCTCCGCAGCCTCTACCTCCAGAAGAACCAATTCTCCGGCGAGTTCCCTCCGAGTCTCACTCGCCTCACTCGCTTGACTCGCTTGGATCTCTCAAACAACAACTTCACCGGCCAAATCCCTTTCTCTGTTAACAACTTGACCCACCTCACTGGCCTCTTCTTAGAACACAACAGTTTCTCTGGTAAAATCCCAAGCATCACCGTGAAGCTCGTTAGCTTCAACGTTTCCTATAACAATCTCAACGGTTCAATCCCCGAGACACTCTCTACGTTCCCGGAAGCTTCCTTCGCCGGAAACATAGATCTCTGCGGACCGCCGTTGAAGGACTGCACCCCGTTCTTCCCGGCGCCGGCGCCGTCTCCGTCGGAGAATTCAACCCCGGTGAATACTCGTAAGAAGTCCAAGAAGCTCTCCACTGGCGCCATTGTCGCAATCGTTGTGGGCTCTGTTCTCGGCTTGGCGTTGCTGCTGCTGCTGCTGTTGCTGTGTCTGAGGCGGCGGCGGCGGGGACAGCCAGCGAAGCCGCCGAAGCCGGTGGTGGCTGCGCGGGCCGCCGCGCCGGCGGAGGCGGGGACGTCGTCGTCGAAGGAGGATATAACCGGGGGTTCGGCGGAGGCGGAGAGGAACAAGCTCGTGTTCTTCGAAGGGGGAATTTACAGTTTCGATTTGGAGGATTTGTTGAGGGCTTCGGCGGAGGTGTTGGGGAAGGGTAGCGTGGGGACTTCGTATAAGGCGGTGCTGGAGGAAGGAACCACCGTGGTGGTGAAGAGGCTGAAGGATGTTGTGGTGACGAAGAAAGAGTTCGAGACGCAAATGGAGGTTCTGGGGAAGATTAAGCACGAGAATGTGGTTCCTCTCAGAGCCTTTTACTTCTCCAAGGACGAGAAATTGCTCGTTTACGATTACATGTCCGCTGGGAGCCTGTCTGCGCTGCTACACGGGAGCAGAGGGTCTGGGCGAACACCACTGGACTGGGACAGCCGTATGAAAATAGCCCTAGGAGCCGCAAGAGGGCTTACATGCCTCCACGTGGCAGGCAAGGTGGTCCACGGCAACATCAAATCTTCCAACATCCTCCTCCGAGGGCCGGACCACAATGCCGGCGTTTCTGACTTCGGCCTCAACCCCTTGTTCGGAAACGGAGCCCCGTCGAACCGCGTGGCGGGCTACCGGGCACCCGAAGTGGTGGAAACCCGGAAGGTGAGCTTCAAGTCTGATGTGTACAGCTTCGGAGTGTTGCTGCTGGAGCTTCTAACAGGAAAAGCACCAAACCAAGCCTCTCTCGGGGAAGAGGGCATTGATCTTCCGAGGTGGGTCCAGTCAGTTGTTCGCGAAGAATGGACCGCGGAGGTTTTCGATGCGGAGCTCATGAGGTTCCACAACATCGAGGAGGAGATGGTTCAACTGTTGCAAATCGCAATGGCTTGTGTTTCCCTTGTGCCTGATCAGAGACCCAACATGCAGGACGTGGTGCGTATGATTGAGGACATTAACCGGGGCGAGACCGATGATGGCTTCAGACAATCCTCCGATGACCCTTCCAAAGGATCCGAGGGTCATACACCACCCCCAGAGTCAAGGACTCCACCTAGCTCTCTCACACCATAA 1953 0.5704 MALFITVVVFLLHLSWSVRVNSEPTQDKQALLAFLSQTPHSNRLQWNASESACDWVGVKCDASRSFVYSLRLPAVDLVGRVPPASLGRLTQLRILSLRSNALTGEIPSDFSNLTFLRSLYLQKNQFSGEFPPSLTRLTRLTRLDLSNNNFTGQIPFSVNNLTHLTGLFLEHNSFSGKIPSITVKLVSFNVSYNNLNGSIPETLSTFPEASFAGNIDLCGPPLKDCTPFFPAPAPSPSENSTPVNTRKKSKKLSTGAIVAIVVGSVLGLALLLLLLLLCLRRRRRGQPAKPPKPVVAARAAAPAEAGTSSSKEDITGGSAEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEVLGKIKHENVVPLRAFYFSKDEKLLVYDYMSAGSLSALLHGSRGSGRTPLDWDSRMKIALGAARGLTCLHVAGKVVHGNIKSSNILLRGPDHNAGVSDFGLNPLFGNGAPSNRVAGYRAPEVVETRKVSFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSLVPDQRPNMQDVVRMIEDINRGETDDGFRQSSDDPSKGSEGHTPPPESRTPPSSLTP* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0094 650 Pfam Protein kinase domain 346 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0094 650 Gene3D Phosphorylase Kinase; domain 1 310 417 - -
Gso5g0094 650 Gene3D Transferase(Phosphotransferase) domain 1 418 630 - -
Gso5g0094 650 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515
Gso5g0094 650 MobiDBLite consensus disorder prediction 612 650 - -
Gso5g0094 650 SUPERFAMILY L domain-like 25 206 - -
Gso5g0094 650 PANTHER OS05G0588300 PROTEIN 11 630 - -
Gso5g0094 650 MobiDBLite consensus disorder prediction 612 629 - -
Gso5g0094 650 PANTHER OS05G0480400 PROTEIN 11 630 - -
Gso5g0094 650 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Gso5g0094 650 MobiDBLite consensus disorder prediction 285 316 - -
Gso5g0094 650 CDD STKc_IRAK 349 612 - -
Gso5g0094 650 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Gso5g0094 650 SUPERFAMILY Protein kinase-like (PK-like) 347 612 IPR011009 -
Gso5g0094 650 Gene3D Ribonuclease Inhibitor 182 228 IPR032675 -
Gso5g0094 650 ProSiteProfiles Protein kinase domain profile. 343 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0094 Gso-Chr5 1026960 1030126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0094 27 630 Receptor kinase-like Gene Family AT5G58300 53.834 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso5g0094 Pkinase 5.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0094 - - gmx:100806857 1123.61