Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0093 ATGGCATCACCCTCAGAACTAAGTCTGGATTGCAAGCCTCAAAGCTATTCCTTGCTACTCAAATCATTTGGAGATCAAACTGATCATTCCTACAAGCTTGAAGAATTCCTCAATCGCTTGGAGGAAGAACGCCTCAAGATTGATGCTTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTCACCAATGCCATGGAAGCTTCAAGGCAGCAACTTCAGGCCTTTAAAGTAAACCATGGAGCAAAGCCAGTTCTGGAAGAATTCATACCCATGAAGCACTTAGCCTCAGAGAGCTCAGAGAAGGCAACAAACATGTCTGACAAGGCAAATTGGATGACATCAGCACAACTATGGAGCCAAGCATCAAGCGAAGGAACCAAACAACAACCACCAATCACAACCCTTAAAGAATCTGATATAGGCTTCAGCATAAGCCCAAAGTTGGCTCTTGACAACAAACAAAGGAACGGTGGAGGAGCCTTCCTTCCATTCTCCAAAGAGAGAAACTCTTGCCAGGGCTCTACATTGCGGCCTCTCCCTGAACTTGTTCTTGCCTCTGCGGAGAAAGAAATGGAGGATAAGAAACGTGCAGAGGTAGAAATTAAGGGAGTTTCGTGTCAGAGTAGGAAGGAGAATTCAGGAAGTGATGGAGCTGTGGTTGATCAAGGAAAAGGTGGTAGCCCAGTTGCATCGTCTCATGCACAAACAACCACAACCACTACTAGTGCACAAACTCATAGGAAAGCTAGAAGGTGTTGGTCACCAGACCTGCACCGAAGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCACAAGTGGCGACCCCAAAACAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTAAAAAGCCATTTGCAGAAATATAGGCTTCACACAAGAAGACCCAGTCCAAGTCCTCAAGCGGGTGCAGCAGCACCACAGCTTGTGGTCCTCGGCGGAATCTGGGTCCCACCGGAATATGCCACGGCGGCACACACAGCCACCCCTACTCTCTACGGCGCCCACCCAACCTCTCACGCGCCGCCGCCACACTACTGCGCCGCCACTCCCATGCCACAAGACTTCTACACCGCGGCGCCGCCCCAGCCGCTGCTTCCGCCACCTCCGCAGCACCACAACGCTTTGCACCACCTGCACATGTACAAGGCGGCGTCCCACGGCCATGGATCGCCGGAATCTGACGTTCCCGGCGGCGGGGAGCGGTCGGAGAGTATTGAGGATGGCAAGTCGGAGAGTAGCAGCTGGAAGGGGGAGAGTGGGGAGAACGAAGGGGAGAGGAAAGGGATTGGTGAAGAGAGCAATGGGAGTGAGATCACTCTCAAATTCTAG 1365 0.5128 MASPSELSLDCKPQSYSLLLKSFGDQTDHSYKLEEFLNRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFKVNHGAKPVLEEFIPMKHLASESSEKATNMSDKANWMTSAQLWSQASSEGTKQQPPITTLKESDIGFSISPKLALDNKQRNGGGAFLPFSKERNSCQGSTLRPLPELVLASAEKEMEDKKRAEVEIKGVSCQSRKENSGSDGAVVDQGKGGSPVASSHAQTTTTTTSAQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAGAAAPQLVVLGGIWVPPEYATAAHTATPTLYGAHPTSHAPPPHYCAATPMPQDFYTAAPPQPLLPPPPQHHNALHHLHMYKAASHGHGSPESDVPGGGERSESIEDGKSESSSWKGESGENEGERKGIGEESNGSEITLKF* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0093 454 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 454 IPR044787 GO:0003700|GO:0006355
Gso5g0093 454 Coils Coil 33 53 - -
Gso5g0093 454 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 248 303 IPR006447 GO:0003677
Gso5g0093 454 MobiDBLite consensus disorder prediction 228 248 - -
Gso5g0093 454 MobiDBLite consensus disorder prediction 395 454 - -
Gso5g0093 454 SUPERFAMILY Homeodomain-like 245 306 IPR009057 -
Gso5g0093 454 Pfam Myb-like DNA-binding domain 250 301 IPR001005 -
Gso5g0093 454 Gene3D - 247 305 - -
Gso5g0093 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 305 IPR017930 -
Gso5g0093 454 Coils Coil 58 78 - -
Gso5g0093 454 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 454 - -
Gso5g0093 454 MobiDBLite consensus disorder prediction 205 251 - -
Gso5g0093 454 MobiDBLite consensus disorder prediction 411 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0093 Gso-Chr5 1003218 1006263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0093 1 454 G2-like Transcription Factor Family AT2G03500 49.491 5.29e-129 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso5g0093 Myb_DNA-binding 9.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0093 - - gmx:100807925 859.366