Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0092 ATGACGATGGACGATGATAGCTCCATATATGTAGGGGGTCTTCCCTACGACGCCACCGAAGAAACCATTCGCACCGTCTTCAATTTGTATGGCGCTATCCTTGATGTTAAGATAATCAACGACCCACGCACCAGGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGAACCATTGACGGCCGTGTGGTTAAAGTTAACGGGGTGAGGACTCGTGGGGGCAGGTCAAATTTTGGCAGAGAACGTTATTACTATCATAATGATGAGAGGAATGGAGATTGGGATCGCAGTAGGGATCGAGACCGAGATTATGATCATGATAGTAATGATAGGGATGGATATAGGAATCGGAGCAGTGATTGGGGTCGAGACCGTGACAGGTCTCGAGATCGTGATCAGGACAGGGATAGAAGGTTTGAGCATATGCATGATTATGATCAAGCCAGAGAAGCTATGCTAGAAAATGACTGGATCCGAGAGGATGATAGAGTTGAAAATGAACAAGAACATAGCAGGGGACATGGTGGAGATGTTGATAGAGATCACAACATAGATTTGAATGTAGACAGGAAAATGGATAGGACCAGTGATCCTGATAGAAGTTTTGGTGAGGATAGAAAAGATCAGTCAAGGAGAAACAATGACTTGAATGTTACAAATCAACATATCATGGATCTTTCATCAGATTCAGCTGGTACTCACAATGAGCAGTTAGAAGCTCAATTAGAGAGGTCAACTCAACAGCTTGATCAACTAAAAAAGGAGGTTTCTCAGATGGAAGAGGGATTGGAAGAGAAAAGACTCCATGTTAAGGAATTACAAAAGCAATCTAAGAAACTGGAGGATGCAGTGATCAATGCAAAGAAAAACTCTTCATATCGTCAGATGCAGTTGATGAAGCTGCATAAAGGTTTTCTGCAAGTGAAAGATTGCACAGAAAAACTAAAAACTAGTGAAAAAGAACTTCAGGCTCTAATTGATACAGCAATGTCAGAGATTGACTGTGATGGATTAAAGGATGGACAACTAACAAATGGAAGTCTTGATGGTAGATTGTAA 1098 0.4162 MTMDDDSSIYVGGLPYDATEETIRTVFNLYGAILDVKIINDPRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRTRGGRSNFGRERYYYHNDERNGDWDRSRDRDRDYDHDSNDRDGYRNRSSDWGRDRDRSRDRDQDRDRRFEHMHDYDQAREAMLENDWIREDDRVENEQEHSRGHGGDVDRDHNIDLNVDRKMDRTSDPDRSFGEDRKDQSRRNNDLNVTNQHIMDLSSDSAGTHNEQLEAQLERSTQQLDQLKKEVSQMEEGLEEKRLHVKELQKQSKKLEDAVINAKKNSSYRQMQLMKLHKGFLQVKDCTEKLKTSEKELQALIDTAMSEIDCDGLKDGQLTNGSLDGRL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0092 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Gso5g0092 365 CDD RRM_SF 9 80 - -
Gso5g0092 365 MobiDBLite consensus disorder prediction 108 156 - -
Gso5g0092 365 Coils Coil 248 303 - -
Gso5g0092 365 SMART rrm2_1 8 80 IPR003954 GO:0003676
Gso5g0092 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Gso5g0092 365 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 360 - -
Gso5g0092 365 Coils Coil 321 341 - -
Gso5g0092 365 Gene3D - 2 97 IPR012677 -
Gso5g0092 365 MobiDBLite consensus disorder prediction 176 233 - -
Gso5g0092 365 SMART rrm1_1 8 80 IPR000504 GO:0003723
Gso5g0092 365 MobiDBLite consensus disorder prediction 176 226 - -
Gso5g0092 365 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 360 - -
Gso5g0092 365 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0092 Gso-Chr5 995909 1000084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0092 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 1.61e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0092 - - gmx:100816804 674.085