Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0087 ATGAAGGGGGAAGTGCAGCTTCAGCCTCCAGCGGTTATGCAAAACCCTAGTGATTCGGACCCTTTGCTCCATAACCAGGAGGAAGAGGATGGGTCTCCGGGAAGCTCTGGTGAGATCAAGAATGAGGAAGAAGACGTTGAGGCTGGATTACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCCGACCCAGAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGGAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTTAGAGTTGAATCGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTTTGGCTGTACAAACTGTGATTGCAGCTATTGGTGGCTTTTCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCATTTGATGATGGTTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATCGGAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATTGCTCCTCCCTCAATAGCAATGACCCCAGAATGGCTGGCTGTCAAAACTGTTGTTATGGTTGGGGCATCTTGGATTGCTTTCCTGCGTCAATGGAGGCATGCTTTGCCCTTGTGGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATATGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGGAATACATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCCAAGTTGGACCCAGAACATGAAGGTCGCTTGAAAATGCTTAAGCTCTTGTAA 930 0.4538 MKGEVQLQPPAVMQNPSDSDPLLHNQEEEDGSPGSSGEIKNEEEDVEAGLLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFSYIMDKDGSFRNSFDDGWDRILSRHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLGGCYFPPKLDPEHEGRLKMLKLL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0087 309 CDD RING_CH-C4HC3_MARCH 54 105 - -
Gso5g0087 309 Pfam RING-variant domain 54 104 IPR011016 GO:0008270
Gso5g0087 309 SUPERFAMILY RING/U-box 52 109 - -
Gso5g0087 309 MobiDBLite consensus disorder prediction 1 42 - -
Gso5g0087 309 ProSiteProfiles Zinc finger RING-CH-type profile. 46 111 IPR011016 GO:0008270
Gso5g0087 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 117 IPR013083 -
Gso5g0087 309 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 309 - -
Gso5g0087 309 SMART ringv_2 53 105 IPR011016 GO:0008270
Gso5g0087 309 MobiDBLite consensus disorder prediction 22 42 - -
Gso5g0087 309 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0087 Gso-Chr5 922880 927498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0087 1 309 C3H Transcription Factor Family AT1G11020 78.816 9.76e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0087 - - gmx:100818950 635.565