Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0086 ATGTTGGTGTCCATGTCCGTGTGCGGCCAAGATGAGATTGAGTTGTCAAGAGATGGCAGCCACTACAGTCTCTCAACTGGAATACTACCTTCCCTTGGAGCCAAAAGTAACCGCAGACTCAAGCTCAAACCCTTCATTATATCTCCCTATGACCGCCGTTATAGGATATGGGAAACTTTCCTTGTTATTCTGGTGGTTTACACTGCTTGGGTTTCTCCCTTTGAATTCGGATTCCTGAAGAAACCACAAGCACCCCTTTCCATAACCGATAACATTGTCAATGGATTTTTTTTCGTGGATATAGTTCTGACCTTCTTCGTGGCTTACATTGACAAAAGCACTTATTTGATCGTGGATGACCGAAAACAGATTGCTTGGAAATATGCAAGGACTTGGTTGGCCTTTGATGTTATCTCCATCATTCCCTCAGAGCTTGTACAAAAGATATCACCTTCTCCTCTTCAATCTTATGGGCTATTCAACATGCTTAGGCTTTGGCGTCTTCGAAGAGTTAGTGCCTTGTTTTCTCGGCTTGAGAAGGACAAAAACTATAACTATTTTTGGGTTCGATGCGCAAAGCTCATTGCTGTTACCCTCTTCGCTGTTCATTGTGCTGCATGTTTCTATTATCTTATTGCTGCACGTTATCATGATCCCAAAAAGACATGGATTGGTGCAACCATGGATAATTTCCTTGAACGCAGCTTGTGGTCAAGATACGTGACATCTATTTATTGGTCCATTACTACCTTAACAACTGTTGGTTATGGAGATTTGCATCCTGTGAATTCAAGGGAGATGATCTTTGACATTTTCTATATGCTCTTTAATCTGGGGTTAACTGCGTATCTGATTGGTAATATGACCAACTTGGTTGTCCATGGCACAAGTCGAACCAGAAAATTTAGGGATACCATACAAGCTGCCTCAAATTTTGCCCAAAGGAACCAATTGCCGCATCGGTTGCAAGACCAAATGCTTGCACACTTGTGTTTGAAGTATAGAACCGACTCAGAAGGGTTGCAGCAGCAAGAGACACTTGATTCTCTTCCTAAAGCCATCAGATCGAGCATTTCACATTATCTTTTCTATTCTCTGATTGACAAGGTCTACTTGTTTCATGGAGTTTCAAATGACTTGCTCTTTCAATTGGTGTCAGAGATGAAAGCAGAATATTTTCCACCCAAAGAAGATGTTATCTTGCAAAACGAAGCCCCCACTGACTTTTATATACTGGTCACTGGTGCCGTGGAACTACTAGTTCTTAAAAATGGGGTTGAGCAGGTTGTTGGAGAGGCCAAAACTGGTGATCTTTGTGGTGAAATTGGCGTGCTTTGTTATAAGCCACAGCTTTTCACAGTTCGAACGAAGCGACTAAGTCAGTTGCTCAGGCTAAACCGTACTTCGTTCTTGAATATTGTTCAGGCCAACGTGGGAGATGGAACCATAATAATGAATAATCTCCTTCAGCATTTGAAAGAGATCAACGATCCAATCATGGAGGGAGTTTTGGTGGATATTGAGAACATGTTAGCTCGTGGTAGGATGGACCTACCAGTGAGTGTGTGCTTTGCGGCAGCAAGAGGAGATGACTTGTTGTTACATCAATTACTCAAACGGGGCATGGATCCAAATGAATCCGACAACAATCGAAGGACAGCTTTGCATATAGCGGCATCTCAAGGAAAAGAGAACTGTGTTTCGCTTCTGTTAGATTATGGGGCGGATCCCAACATTAGAGATTTGGAAGGTAATGTGCCACTATGGGAGGCTATAGTGGAAGGACATGAGTCAATGAGCAAGCTGTTATCAGAGAATGGAGCAAACTTGCAATGCGGGGATGTGGGTCAATTTGCATGTAATGCCGTTGAACAAAACAGTCTCAACTTGCTGAAGGAAATAATGCGCTATGGAGGAGATATCACGCTTCCAAACAGCAACACAGGGACCACAGCCTTGCACGTTGCAGTCTCTGAAGGCAACGTTGAGATTGTCAAATTCCTTTTGGATCACGGGGCGAGTATTGACAAGCCAGACAAGCATGGCTGGACCCCAAGAGATCTTGCAGATCAGCAGGCACATACAGAAATCAAAGCCCTTTTTGATTCCACTGGGGAGCCTAAGGTTCAGTCTTCCTTCGCTATTCCCGAGAGGAACAGCAAGATCAGGTACCTTGGTAGGTTCACAAGTGAGCCAACCATGCCATTGCCTCTTGATGGCTCGTTTCATGAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCGGCCGAGGCGTCGGAGCAACAACTACCATAACTCACTCTTTGGGATAATGTCAGCAGTACACAATGGGGAAAAGGACCTGCTTTCAGCTGTTGACATGAATAACAATGCAAGGAATGGTATGAAGAGTAGTAGTGCTAGTAGTAGTGCACTTGGTCCAACTAGAGTTATCATTAGTTGCCCTGAGAAGGGTGAGGTTGTTGGGAAGCTTGTTTTACTACCTGGAAGCTTTCAAGAGCTAGTTGAGATTGGAGCCAAGAAATTTGGTTTCTATCCTAATAAGGTTGTATGCAAAGATGGAGGTGAAATTGAAGATCTGGAGGTGATTAGGGATGGTGACCATCTTGTTTTTCTTGGTGCAAGTGGGGTGCTTGAATCCAATTGTCCAGCTCCAGCACCACTAACCAATGGTGTGCATATATAG 2682 0.44 MLVSMSVCGQDEIELSRDGSHYSLSTGILPSLGAKSNRRLKLKPFIISPYDRRYRIWETFLVILVVYTAWVSPFEFGFLKKPQAPLSITDNIVNGFFFVDIVLTFFVAYIDKSTYLIVDDRKQIAWKYARTWLAFDVISIIPSELVQKISPSPLQSYGLFNMLRLWRLRRVSALFSRLEKDKNYNYFWVRCAKLIAVTLFAVHCAACFYYLIAARYHDPKKTWIGATMDNFLERSLWSRYVTSIYWSITTLTTVGYGDLHPVNSREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPHRLQDQMLAHLCLKYRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLIDKVYLFHGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVELLVLKNGVEQVVGEAKTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTSFLNIVQANVGDGTIIMNNLLQHLKEINDPIMEGVLVDIENMLARGRMDLPVSVCFAAARGDDLLLHQLLKRGMDPNESDNNRRTALHIAASQGKENCVSLLLDYGADPNIRDLEGNVPLWEAIVEGHESMSKLLSENGANLQCGDVGQFACNAVEQNSLNLLKEIMRYGGDITLPNSNTGTTALHVAVSEGNVEIVKFLLDHGASIDKPDKHGWTPRDLADQQAHTEIKALFDSTGEPKVQSSFAIPERNSKIRYLGRFTSEPTMPLPLDGSFHESQSQSQSQSRPRRRSNNYHNSLFGIMSAVHNGEKDLLSAVDMNNNARNGMKSSSASSSALGPTRVIISCPEKGEVVGKLVLLPGSFQELVEIGAKKFGFYPNKVVCKDGGEIEDLEVIRDGDHLVFLGASGVLESNCPAPAPLTNGVHI* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0086 893 Gene3D - 56 293 - -
Gso5g0086 893 SMART ANK_2a 583 612 IPR002110 GO:0005515
Gso5g0086 893 SMART ANK_2a 550 579 IPR002110 GO:0005515
Gso5g0086 893 SMART ANK_2a 517 546 IPR002110 GO:0005515
Gso5g0086 893 SMART ANK_2a 648 677 IPR002110 GO:0005515
Gso5g0086 893 ProSiteProfiles cAMP/cGMP binding motif profile. 372 474 IPR000595 -
Gso5g0086 893 Pfam KHA, dimerisation domain of potassium ion channel 808 870 IPR021789 -
Gso5g0086 893 CDD CAP_ED 372 477 IPR000595 -
Gso5g0086 893 ProSiteProfiles KHA domain profile. 808 888 IPR021789 -
Gso5g0086 893 ProSiteProfiles Ankyrin repeat profile. 550 582 IPR002110 GO:0005515
Gso5g0086 893 SUPERFAMILY Voltage-gated potassium channels 49 293 - -
Gso5g0086 893 ProSiteProfiles Ankyrin repeat region circular profile. 550 581 - -
Gso5g0086 893 Gene3D Jelly Rolls 336 496 IPR014710 -
Gso5g0086 893 ProSiteProfiles Ankyrin repeat profile. 583 615 IPR002110 GO:0005515
Gso5g0086 893 SUPERFAMILY cAMP-binding domain-like 297 492 IPR018490 -
Gso5g0086 893 SMART cnmp_10 372 489 IPR000595 -
Gso5g0086 893 PRINTS EAG/ELK/ERG potassium channel family signature 67 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso5g0086 893 PRINTS EAG/ELK/ERG potassium channel family signature 90 100 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso5g0086 893 PRINTS EAG/ELK/ERG potassium channel family signature 101 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso5g0086 893 PRINTS EAG/ELK/ERG potassium channel family signature 240 257 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso5g0086 893 PRINTS EAG/ELK/ERG potassium channel family signature 266 277 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso5g0086 893 PRINTS EAG/ELK/ERG potassium channel family signature 284 293 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso5g0086 893 Gene3D - 518 703 IPR036770 -
Gso5g0086 893 MobiDBLite consensus disorder prediction 740 761 - -
Gso5g0086 893 Pfam Ion transport protein 55 299 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso5g0086 893 ProSiteProfiles Ankyrin repeat region circular profile. 648 680 - -
Gso5g0086 893 MobiDBLite consensus disorder prediction 735 761 - -
Gso5g0086 893 ProSiteProfiles Ankyrin repeat profile. 648 680 IPR002110 GO:0005515
Gso5g0086 893 PANTHER POTASSIUM CHANNEL AKT1 3 873 IPR045319 GO:0005249|GO:0006813
Gso5g0086 893 Pfam Cyclic nucleotide-binding domain 392 476 IPR000595 -
Gso5g0086 893 SUPERFAMILY Ankyrin repeat 523 702 IPR036770 -
Gso5g0086 893 PANTHER K+ TRANSPORTER 1-RELATED 3 873 - -
Gso5g0086 893 Pfam Ankyrin repeats (3 copies) 524 611 IPR002110 GO:0005515
Gso5g0086 893 Pfam Ankyrin repeats (3 copies) 622 694 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0086 Gso-Chr5 915068 922023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0086 15 870 Ion Channels AT2G25600 64.046 0.0 1118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0086 K21867 - gmx:100819491 1774.21