Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0060 ATGGAGCATGTTTTGGAGAAAAGATTTCCTCTTAATGCAGAAGATTACACATTATATGAAGAAGTTGGTGAAGGCGTTAGTGCCTCCGTATACAGGGCTCTCTGTGTTCCACTCAATGAGATAGTGGCCATCAAGGTTCTTGATCTAGAGAAGTGCAATAATGACTTGGATGGCATTCGTAGAGAGGTACAGACCATGAACTTGATTGATCACCCGAATGTTTTACGGGCACATTGCTCTTTTACTGCTGGACACAATCTATGGGTTGTGATGCCATACATGGCAGGGGGGTCTTGCCTTCATATAATGAAATCTAACTATCCTGAGGGTTTTGAAGAGCCTGTTATTGCTACTTTATTGCATGAAGTTCTCAAAGCTCTTGTCTATCTTCATGCCCATGGTCACATACATAGAGATGTAAAGGCTGGGAATATTCTGCTTGATTCTAATGGTGCAGTCAAACTAGCTGACTTTGGAGTGTCAGCATGTATGTTTGATACTGGAGATAGGCAACGTTCAAGAAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCTGAAGTTATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACGGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCTATGAAGGTTTTGCTCATGACTTTACAAAATGCCCCTCCAGGTCTTGACTATGAAAGAGACAAAAAATTTTCAAAGGCTTTCAAAGAGTTGGTTGCCACCTGCTTAGTAAAAGACCCAAAAAAGCGTCCAAGTTCAGAAAAGCTTTTAAAACACCACTTCTTTAAACAAGCACGTGCCAGCAAATATTTAGCTCGCACCATTTTAGAAGGCCTTGCTCCTTTAGGAGATCGTTTTAGAATGCTGAAGGCTAAAGAGGCGGATTTATTGGTGCAGAACAAGGCTCTTTATGAAGATAAAGATCAATTATCTCAGAAAGAATATATTCGAGGAATCAGTGCCTGGAATTTTAACCTGGAGGATTTGAAAAGTCAAGCCGCTCTTATTCAAGATGATGACATACCTAATGCAGAAGAGCCACAAAGGGATAAGAAGCAAAAAGACAGATTGGACAACTTCAAAGTTTCTGCAGAGAGGCTATCAGCTGGAGCAGCTAATCATTCAGATGATGCACCCACGCAGGACAAGGAGGATGGATTCAACAATCTTCAGGATTTGGAGGGTTCACTTGTTTCATTTCCTACTAAACCTCTTCAAGCACTTAAAGGGTGCTTTGATATGTGTGAAGATGACATTAATAACAGCAGTCCAAGAGATTTGGATCATGATGGAAGAATTGACAATGAAAGCTCTAGGCCAAGTACTTCATTACAACAAAATACTACCAGTCAGCAAAAAAAGTTTCCAAGTGGTTCTTTACTACCTGATAATTTTCTTTTTCCCAAAATGGTTGTTACTGATGGGGACAGGGATTATCTACAAACAAAGTATTCTTCAGAGAGGAATCACAGTGGTCCATTGCAATATCGGCAGAAAAGAGACACCAACAACCTTCCACTGGTTGATGACACATCGGATGGAGCATTTTTCCGGCGTAGGGGGCGGTTCACATTGACAGATCTCAGTCCAATGGGTCCTTCAAACAGCACATCTGGCCCAGTTGTTAGTCCTACCAGTCCACCAAATCAAAATTTCATGTCTACCGCTATTCTTCCATCACTGCAGTGCATCTTGCAACATAATGGTTTGCAGAGGGAAGAGATTATTAAATTAATAAAGTATGCCGAACAATCTTCTGGCAAGAATACAGAATCAGTAGAGGCAGGGACAGGTGATATGTTGCAGGCACCACCTGCAACAACTAGGGAGCGAGAGCTGCATTTTCAGGTGATTCAACTCCAACAGAGCATTGGAAGCCTTGTTGAGGAATTGCAAAGACAAAAGATGAAAAATGTTCAGTTGGAAAAACAGTTGAACAGTATGGCTAACAGAGTGGAAAAGTGA 2010 0.4124 MEHVLEKRFPLNAEDYTLYEEVGEGVSASVYRALCVPLNEIVAIKVLDLEKCNNDLDGIRREVQTMNLIDHPNVLRAHCSFTAGHNLWVVMPYMAGGSCLHIMKSNYPEGFEEPVIATLLHEVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKAFKELVATCLVKDPKKRPSSEKLLKHHFFKQARASKYLARTILEGLAPLGDRFRMLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDIPNAEEPQRDKKQKDRLDNFKVSAERLSAGAANHSDDAPTQDKEDGFNNLQDLEGSLVSFPTKPLQALKGCFDMCEDDINNSSPRDLDHDGRIDNESSRPSTSLQQNTTSQQKKFPSGSLLPDNFLFPKMVVTDGDRDYLQTKYSSERNHSGPLQYRQKRDTNNLPLVDDTSDGAFFRRRGRFTLTDLSPMGPSNSTSGPVVSPTSPPNQNFMSTAILPSLQCILQHNGLQREEIIKLIKYAEQSSGKNTESVEAGTGDMLQAPPATTRERELHFQVIQLQQSIGSLVEELQRQKMKNVQLEKQLNSMANRVEK* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0060 669 MobiDBLite consensus disorder prediction 352 404 - -
Gso5g0060 669 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Gso5g0060 669 MobiDBLite consensus disorder prediction 452 473 - -
Gso5g0060 669 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0060 669 MobiDBLite consensus disorder prediction 541 561 - -
Gso5g0060 669 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Gso5g0060 669 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 666 - -
Gso5g0060 669 MobiDBLite consensus disorder prediction 543 561 - -
Gso5g0060 669 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0060 669 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 666 - -
Gso5g0060 669 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0060 669 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Gso5g0060 669 MobiDBLite consensus disorder prediction 437 476 - -
Gso5g0060 669 MobiDBLite consensus disorder prediction 437 451 - -
Gso5g0060 669 CDD STKc_OSR1_SPAK 14 277 - -
Gso5g0060 669 Coils Coil 639 666 - -
Gso5g0060 669 MobiDBLite consensus disorder prediction 357 377 - -
Gso5g0060 669 Gene3D Transferase(Phosphotransferase) domain 1 97 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0060 Gso-Chr5 600833 613849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0060 1 666 MAP Kinase Kinase Kinase Kinase AT5G14720 66.084 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Gso5g0060 Pkinase 1.4e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0060 K08835 - gmx:100784402 1334.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0060 5 600833 613849 Gso19g0066 19 729984 741109 GST