Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0055 ATGGACAAAAAACCATGCAACTCATCATCTCATGATCCTGAAGTGAGAAAGGGACCATGGACCATGGAAGAAGACTTGATCTTGATAAACTATATTGCAAATCACGGTGAAGGTGTTTGGAATTCCTTAGCCAAAGCTTCTGGTCTCAAACGAACGGGAAAGAGTTGTCGACTCCGTTGGCTAAACTACCTTCGTCCTGATGTTAGAAGAGGAAACATTACACCCGAGGAACAGCTTTTGATCATAGAACTTCATGCAAAGTGGGGCAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAGATTAAGAACTTCTGGAGAACAAGGATCCAAAAGCACATTAAGCAAGCTGAGACTTCACAACAACATGGTAATTCAGAGAATAATGATCATCAAGCAAGCACTAGTACTAGCAAAGTGTCCACCATGGCACATCCAAATGAGACTTTCTCTCCACCCTCATACCAAGGAACTTTTGAGCCATTCCAACCTCAATTCCCTACAATCACTGATCAATCAAGTTGTTGTACCACCACCAACGATAACAACAACTATTGGAGCATCGAGGATATCTGGTCGTCTATGCAATTACTCAATGGAGATTAA 621 0.4187 MDKKPCNSSSHDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIIELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAETSQQHGNSENNDHQASTSTSKVSTMAHPNETFSPPSYQGTFEPFQPQFPTITDQSSCCTTTNDNNNYWSIEDIWSSMQLLNGD* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0055 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Gso5g0055 206 MobiDBLite consensus disorder prediction 120 151 - -
Gso5g0055 206 CDD SANT 74 113 IPR001005 -
Gso5g0055 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Gso5g0055 206 SMART sant 69 117 IPR001005 -
Gso5g0055 206 SMART sant 16 66 IPR001005 -
Gso5g0055 206 Gene3D - 17 69 - -
Gso5g0055 206 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 203 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso5g0055 206 CDD SANT 19 64 IPR001005 -
Gso5g0055 206 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Gso5g0055 206 Gene3D - 74 146 - -
Gso5g0055 206 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 203 - -
Gso5g0055 206 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gso5g0055 206 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gso5g0055 206 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Gso5g0055 206 MobiDBLite consensus disorder prediction 122 151 - -
Gso5g0055 206 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0055 Gso-Chr5 535841 539025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0055 15 206 MYB Transcription Factor Family AT3G01530 60.513 6.13e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso5g0055 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0055 K09422 - gmx:100305972 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0055 5 535841 539025 Gso19g0060 19 654502 658560 GST