Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0053 ATGTCTGGGTTGGAGGAATTGAGAAAAAAGCTTGCACCTTTATTTGATGCCGAGAAGGGGTTCTCATCAAGTTCAACGTTGGACCCTTGTGATTCTTACACATTCTCGGATGGTGGGACTGTGAACTTGTTGAGTAGATCATATGGGGTGTACAATATCAACGAGCTTGGGTTGCAGAAGTGCACATCTAGGTCCGTGGATGAAACTGATCACAGTGAGAAAACGTATAGGTGTGGTTCTCATGAGATGAGAATCTTTGGAGCAATAGGGAGTGGTGCCAGTAGTGTTGTGCAGAGAGCTATACATATACCAACACATAGGATTCTGGCATTAAAGAAGATCAACATCTTCGAGAAGGAGAAAAGGCAGCAGCTCCTTACTGAGATAAGGACATTATGTGAAGCACCGTGTTATGAGGGTCTTGTAGAATTTCATGGGGCATTTTACACTCCAGACTCTGGACAGATAAGCATAGCTTTGGAGTACATGGATGGAGGATCGCTTGCAGATATCTTACGAATGCATAGAAGGATACCTGAACCTATTCTATCTTCCATGTTTCAGAAGCTCCTGCATGGTCTAAGCTATCTCCATGGAGTTAGACATCTAGTTCACAGAGACATAAAGCCTGCCAATCTACTAGTAAATCTCAAGGGGGAGCCAAAGATTACTGATTTTGGTATTAGTGCCGGCTTAGAGAATTCAGTGGCAATGTGTGCTACATTTGTTGGAACTGTTACATATATGTCACCTGAGAGGATTCGAAATGAAAGCTATTCTTATCCAGCTGATATTTGGAGCCTTGGTCTTGCACTTTTTGAGTGTGGGACAGGAGAATTCCCGTATACTGCAAATGAAGGTCCTGTCAATCTTATGTTGCAGATCCTGGATGATCCATCACCATCACCATTGAAAAACAAGTTTTCACCTGAATTCTGCTCTTTTGTTGATGCTTGCTTACAAAAGGATCCAGATACTAGGCCAACAGCAGAGCAGCTGCTTTCGCACCCCTTTATCACAAAGCATGATGATGCCAAGGTTGATTTGGCAGGATTTGTTCGAAGCGTTTTTGATCCTACACAAAGATTGAAGGATTTAGCAGATATGTTGACAATACATTATTACTTGCTATTTGATGGACCTGATGATTTGTGGCAACATACAAAGAATTTATATAGCGAAAGCTCAATTTTCAGTTTCTCTGGGAAACAACATTGTGGTCCAAGTAATATCTTTACATCTCTATCAAGTATTAGAACTACATTAGTTGGTGACTGGCCTCCTGAAAAGTTGGTGCATGTTGTTGAGAGGCTCCAATGCCGCGCTCACGGTGAAGATGGAGTTGCAATTAGGGTATCGGGATCCTTCATAATTGGAAATCAGTTCCTCATATGTGGAGATGGCATTCAAGTAGAGGGCTTGCCAAACTTCAAGGATCTTGGAATTGACATTCCTAGCAAAAGAATGGGTATATTTCATGAACAATTCATTGTGGAACCAAAAAGCCTTATTGGATGCTACACCATTGTCAAACAAGAGCTATACATTAACCAATAA 1557 0.4149 MSGLEELRKKLAPLFDAEKGFSSSSTLDPCDSYTFSDGGTVNLLSRSYGVYNINELGLQKCTSRSVDETDHSEKTYRCGSHEMRIFGAIGSGASSVVQRAIHIPTHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMHRRIPEPILSSMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYTANEGPVNLMLQILDDPSPSPLKNKFSPEFCSFVDACLQKDPDTRPTAEQLLSHPFITKHDDAKVDLAGFVRSVFDPTQRLKDLADMLTIHYYLLFDGPDDLWQHTKNLYSESSIFSFSGKQHCGPSNIFTSLSSIRTTLVGDWPPEKLVHVVERLQCRAHGEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLGIDIPSKRMGIFHEQFIVEPKSLIGCYTIVKQELYINQ* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0053 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Gso5g0053 518 CDD PKc_MAPKK_plant_like 84 343 - -
Gso5g0053 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Gso5g0053 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0053 518 Gene3D Phosphorylase Kinase; domain 1 54 164 - -
Gso5g0053 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 517 - -
Gso5g0053 518 PANTHER - 2 517 - -
Gso5g0053 518 Gene3D - 364 516 - -
Gso5g0053 518 SUPERFAMILY Protein kinase-like (PK-like) 85 385 IPR011009 -
Gso5g0053 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0053 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Gso5g0053 518 Gene3D Transferase(Phosphotransferase) domain 1 165 363 - -
Gso5g0053 518 SUPERFAMILY NTF2-like 364 461 IPR032710 -
Gso5g0053 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0053 Gso-Chr5 497755 502143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0053 30 518 MAP Kinase Kinase Gene Family AT5G40440 79.550 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gso5g0053 Pkinase 1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0053 K20607 - gmx:100784935 1055.82