Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0049 ATGGAATTTGATTCAAGCTTTCAAGGGCCACAATACCTTTCAAGCCCTTTCCCACCTACGACTCAAACCATGTTTCCTTCGCAAAGCTCGATTCTAATTCCACCATCACCCCAGCCCATCATGTTTCACCCCAACAACACTACTTTTCATCATTTTCAAGACTTCATCACGAATGTGCCTACCTTTGTGATGGAGGGTCCTTCCTCCAACATCACCACCCCCTTGTATAGAGGGTCTTTCCTTGGAGGCTTTGTTAACATCCACCATCACCACCCCAACAAAATGGATGCTTTGCATGGTCACCACCATAAAGGAAAAATCATTTGGGATTTTTCACAACAATTGATGGTTCATTCATCTGAAGCTTCTTCCTCCAAGTCATCATCACCTCTTTCTCTCTCTAATGAGTATGGATTGGTGATGGATGACTATCATTGGCACACTAATCAGAGGAGTGTGCAACAAAAGATGAAGGTGGTAAAGGTGAATATGGATACCAACATTGCAAATGATAACATAATCAAAGGACAGTGGACTCTGGAACAGGACAATGCTCTTGTGGAATTGGTAAACCAATTCGGACTTAAGAAATGGTCGCAAATTGCAAAGTTACTGCCCGGAAGGATTGGGAAGCAGTGTCGGGAAAGATGGCACAACCATCTCATGCCAAACATTAAGAAGGACTCATGGACCCTGGAGGAAGACATGATTCTAATAAAAGCCCATAAAAAACTTGGAAACAAATGGTCGGAGATTGCAAAAAGGTTGCCTGGTAGGCCTGAGAACACCATTAAGAACCATTGGAACACCACCAAACGGCGCCAAAATTGCAAGAGACACAAGCACACAATTTATGAAGGGTCACTCCTCCATGGCTACATCAAAAAGGTTAGTGCTGCTGAAGATGCTACAAAAGAACCAAAGAAGAATAAGATGCAGTTGTGA 945 0.4307 MEFDSSFQGPQYLSSPFPPTTQTMFPSQSSILIPPSPQPIMFHPNNTTFHHFQDFITNVPTFVMEGPSSNITTPLYRGSFLGGFVNIHHHHPNKMDALHGHHHKGKIIWDFSQQLMVHSSEASSSKSSSPLSLSNEYGLVMDDYHWHTNQRSVQQKMKVVKVNMDTNIANDNIIKGQWTLEQDNALVELVNQFGLKKWSQIAKLLPGRIGKQCRERWHNHLMPNIKKDSWTLEEDMILIKAHKKLGNKWSEIAKRLPGRPENTIKNHWNTTKRRQNCKRHKHTIYEGSLLHGYIKKVSAAEDATKEPKKNKMQL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0049 314 Gene3D - 174 226 - -
Gso5g0049 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 225 IPR017930 -
Gso5g0049 314 SUPERFAMILY Homeodomain-like 172 268 IPR009057 -
Gso5g0049 314 CDD SANT 178 221 IPR001005 -
Gso5g0049 314 ProSiteProfiles Myb-like domain profile. 222 272 IPR001005 -
Gso5g0049 314 PANTHER MYB DOMAIN PROTEIN 100-RELATED 129 297 - -
Gso5g0049 314 SMART sant 226 274 IPR001005 -
Gso5g0049 314 SMART sant 174 223 IPR001005 -
Gso5g0049 314 PANTHER MYB PROTEIN-RELATED 129 297 - -
Gso5g0049 314 Gene3D - 229 272 - -
Gso5g0049 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 276 IPR017930 -
Gso5g0049 314 Pfam Myb-like DNA-binding domain 227 270 IPR001005 -
Gso5g0049 314 Pfam Myb-like DNA-binding domain 175 221 IPR001005 -
Gso5g0049 314 CDD SANT 229 272 IPR001005 -
Gso5g0049 314 ProSiteProfiles Myb-like domain profile. 170 221 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0049 Gso-Chr5 458624 461797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0049 173 300 MYB Transcription Factor Family AT4G18770 62.791 1.14e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso5g0049 Myb_DNA-binding 9.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0049 - K09422 gmx:102668949 622.854