Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0040 ATGCCAATGGAAACTCCAAGCTCCCACTCTCTCTTCGCCCACATCGCCTCCCGAGAACTCTTCCGAGTTCCAAAACGACATCGTATGGACGGATTCGTCTCCGGCTTCAATGAAACTGGTCTCCTCGCCGTACAGCACAACGCCGAGGACACCATTCCCCTCTCTCTCTCCTTCTGCAAGACTTCAAAATTTGGACACATTCTCGCGGTGTCCGACGAGGACGGTTACGTCACCTTGTTTGATACTCGCCGCAACTTCCCTGTTACTGCAAACTTTGAAGAAAACTCAGAGAAAGTGAAGATTTGCCATTGGGTTTCACATCAGAATGCTGTTTTTGATACCTGTTGGATTAAGGAAGATACGCAGATTCTCACTGCTTCTGGTGATCAAACAATAAAATTATGGGATGTTCAAGAACAGAAGTGTCTTGGAGTGTTGACTGGGCACACAGGAAGTGTGAAATCTATGTGTTCTCATCCAACTAATTCTGATATTATTGTCTCTGGTTCTAGAGATGGATCCTTTCGTATTTGGGACTTGAGATGCAAATCCACTGCTAAGAGTAGGCATGGAGAAGTTGGCATATGTTCAATGGGTGGTGTCAAAGGAGCACATATTTCATCTCAAGCAAGACGAACTAGGAGAGGAAAGGCTGCTCCAATGAGCATTACATCTGTTCTTTGTCTCAAGGACCAGGTTTCTATAGCCACTGCTGGGGCGGTGGATAGTGTGTTGAAGTTCTGGGATACCAGAAATTTGAAAAGTACTGTCACTCAGACATCTCCTAGTCCTCAGTCAGCTGAAAAGCAAACATTACATGGAATATCAAGCTTGTCCCAAGATGAAAGTGGACTTTTTCTTTCAGCCTCTTGCATGGATAATCGAATTTATTTGTATAACACTCTTCAACTTGACAAAGGGCCCTTAAAATCTTTTTCTGGGTGCCGAATTGAATCATTTTTTGTAAAGTCTGCAATTAGCCCTGATGCATCAAACATAGTCAGTGGTTCTAGTGATGGAAATGCCTATGTTTGGAAGGTTGACAAACCTCTGGAAGATCCTACTATTTTGAAAAGCCATGATGATGGTGAAGTTACAGCAGTTGACTGGTGTAGCTCTGAAATTGGGAAATTAGCAACATGTTCTGATGATTTCACAGTTCGAACATGGAATAAAAACAGTTATGTCTCTAGTATACAATGTGCATCTGCCATCCGAAGAAGAGTAATGGCAATTCCTAGTATAGAGTGCAAAATGCTTTTAAATAATGGAAAAAGGTACTCTAAGACAAATGAAGATGCTTTTTTACCCGATGATGCTCTACACCCAATTACGTCACCCACTCCAATCACACCACCTAAAATGAACATATCTGAAGGCCATACGAACCAACTTTCCTCAAGATTAGATCTAAATGCATCCTCTGAAAAAACTCCAGAATCTGCTTTGAAGAGCCCCTCATCTGTATTGAATCCTCCATCATCCCTAAAAAGAACTATCCGAGACTACTTTCTAGCATCTTCAAGAACCTTGTAG 1536 0.4219 MPMETPSSHSLFAHIASRELFRVPKRHRMDGFVSGFNETGLLAVQHNAEDTIPLSLSFCKTSKFGHILAVSDEDGYVTLFDTRRNFPVTANFEENSEKVKICHWVSHQNAVFDTCWIKEDTQILTASGDQTIKLWDVQEQKCLGVLTGHTGSVKSMCSHPTNSDIIVSGSRDGSFRIWDLRCKSTAKSRHGEVGICSMGGVKGAHISSQARRTRRGKAAPMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSTVTQTSPSPQSAEKQTLHGISSLSQDESGLFLSASCMDNRIYLYNTLQLDKGPLKSFSGCRIESFFVKSAISPDASNIVSGSSDGNAYVWKVDKPLEDPTILKSHDDGEVTAVDWCSSEIGKLATCSDDFTVRTWNKNSYVSSIQCASAIRRRVMAIPSIECKMLLNNGKRYSKTNEDAFLPDDALHPITSPTPITPPKMNISEGHTNQLSSRLDLNASSEKTPESALKSPSSVLNPPSSLKRTIRDYFLASSRTL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0040 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 188 IPR001680 GO:0005515
Gso5g0040 511 SUPERFAMILY WD40 repeat-like 58 395 IPR036322 GO:0005515
Gso5g0040 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Gso5g0040 511 SMART WD40_4 38 81 IPR001680 GO:0005515
Gso5g0040 511 SMART WD40_4 265 300 IPR001680 GO:0005515
Gso5g0040 511 SMART WD40_4 207 249 IPR001680 GO:0005515
Gso5g0040 511 SMART WD40_4 350 391 IPR001680 GO:0005515
Gso5g0040 511 SMART WD40_4 139 179 IPR001680 GO:0005515
Gso5g0040 511 SMART WD40_4 97 136 IPR001680 GO:0005515
Gso5g0040 511 SMART WD40_4 305 346 IPR001680 GO:0005515
Gso5g0040 511 MobiDBLite consensus disorder prediction 438 494 - -
Gso5g0040 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 348 IPR001680 GO:0005515
Gso5g0040 511 PANTHER BNAA06G31940D PROTEIN 3 506 - -
Gso5g0040 511 Pfam WD domain, G-beta repeat 103 136 IPR001680 GO:0005515
Gso5g0040 511 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Gso5g0040 511 Pfam WD domain, G-beta repeat 356 391 IPR001680 GO:0005515
Gso5g0040 511 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Gso5g0040 511 Gene3D - 189 421 IPR015943 GO:0005515
Gso5g0040 511 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Gso5g0040 511 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Gso5g0040 511 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Gso5g0040 511 Gene3D - 29 188 IPR015943 GO:0005515
Gso5g0040 511 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 3 506 - -
Gso5g0040 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Gso5g0040 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Gso5g0040 511 MobiDBLite consensus disorder prediction 451 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0040 Gso-Chr5 381924 386042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0040 107 355 U-box Gene Family AT1G04510 25.092 9.51e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0040 K11790 - gmx:100775857 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0040 5 381924 386042 Gso19g0047 19 484457 488399 GST