Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0038 ATGGCCTCTTCTAGCTACTCCAATTCTCCATGTGCAGCCTGCAAGTTTTTGAGAAGGAAGTGCATGCCGGATTGCATTTTTGCCCCATATTTCCCACCAGAAGAGCCACATAAATTTGCAAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGCAAACTCCTCAATGAGGTGCAACCCCATCAAAGAGAGGATGCTGTGAACTCTCTGGCCTATGAAGCCGAAGCAAGGATCAAAGATCCAGTGTATGGTTGTGTTGGGGCCATTTCAGTGCTCCAAAAGCAAGTCCTTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATAGTGCTTGCAATGAAATTCCAAACACCACTACTCATCATGGAGGGAGAAGGATGAGTGATGATGGAGGAGGTGGTGGTTCCTCACTTGCTCACTCTCATGGTTTCTATTATCCTTCTAATTGGAACAATGATCCTTGTGGAAATAGTAATGGTTACCCCAGAGGCGATATATAA 513 0.4503 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQVLRLQKELDATNADLIRYSACNEIPNTTTHHGGRRMSDDGGGGGSSLAHSHGFYYPSNWNNDPCGNSNGYPRGDI* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0038 170 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Gso5g0038 170 Coils Coil 89 109 - -
Gso5g0038 170 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Gso5g0038 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 160 - -
Gso5g0038 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0038 Gso-Chr5 358676 360585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0038 4 130 AS2 family AT3G27650 79.528 9.69e-73 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso5g0038 LOB 1e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0038 5 358676 360585 Gso19g0045 19 454934 457001 GST