Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0029 ATGAATGATCTGATCCGAGGGAAAATGGTGAACATGGCCTTGTTACTGAGTTTTCTGGTGACGGCGACGGTACTGGCGTCGTCGTCTCACGCTGCTTCTAGTGGTCCTCACATTGCCGACGTTAACATACTCTTGCCGCCGAAAATGACCTTCCCTGTCGATTATAGGCTCCAAGGAAGTGACGGTTGCTTCCAATGGTCATGGGATCATCATGATATTCTGTCTGTTGAGCCAGAGTATAATTCAAGCAGCAAGTGCTCGACTAGTGCAAGGATAAGATCCATTGCCCCTTATAGTGGTCGGAAGGAAACTGCTGTTTATGCTGCGGATTTGCAGACTGGAATTGTGATTCGCTGCAAAGTCTTCATTGACAACATATCAAGAATACAGATATTTCATAATTCTATTAAACTTGATTTAGAGGGGCTTGCCACACTACGTGTCCGTGCCTTTGACAGTGAAGAAAATGTATTTTCCTCATTAGTTGGCTTACAGTTTATGTGGAGCCTTATGCCTGAAGCCAACGGATTACCTTGTCACCTTGTTAATGTTCCGCTAAAGGATTCCCCCCTTAGTGATTGTGGAGGACTGTGTGGTAACTTAGATATACAAATAAAACTTGAAGACAATGGTGTATTTTCAGATCTGTTTGTAGTAAAGGGAATTGAGATTGGTCATGAGATTGTGTCAGTGCATCTGCTCGAGCCACAGTTAAAGAATTTGGCTGATGAGATTGTTCTTACTGTTGCTGAAGCTATGTCACTTGATCCTCCATCACCAGTCTTTGTCCTTGTTGGTGCAGTCATTCCCTACACCCTTAAAGTCATCCGGGGAAATGTTCCTCAAGTGGTCACCTTACCCTCAGCACATCACCAATGGTCTGTCTCAAATGCTTCGGTTGCTCAGGTTGACTCAAAAACAGGGCTAGCATATGCATGGAACTTGGGAATGGCAGCTGTTATTGTTGAAGATACTAGGATTGCTGGCCATGTACAAGTGTCTTCACTAAATGTGGTCCTACCAGCTTCTTTATGTTTGTATATATCACCTTTATCTAGTTCTGGTGATCCAGTGGAAGGAATCAAATCTATTGCTCTAACGACCCGTTGGTATGTTGTATCTGGCCATCAGTATCTTATCCAGATAAAGGTTTTTGCACATGATCATGATGCGCAAGAGATTTATATTACAGAGAATGACGATGTTAAGGTGTATGATAATGATTCTGGTCACTGGAAAACATTTTGGGTTTCAAATGATATTGCTGTAAAACATGGCTGGCGGAATTCTAAAATCTTGAAGGCTTATTCACCAGGACTTGAAAAATTGACAGCTTCTTTGAGCTATCCTGGTGGGGCTGATGACAAAAAGGAGATTATCAAAGCTGTGCAAGAAGTCATGGTTTGTGATCGAGTAAAGTACACCTTGGGCAATGAAAGTGGAATCATCTTACTGCCCTGGTCTCCTGGTGTTTATCAGGAGGTGGAGTTAAAGGCTATAGGAGGTTGTGCAAAAACAGTGAGTGACTACAAATGGCTATCTTCGGACTTGTCTACTGTATCTGTGTCAGCTTTTGGTGTTGTCCAGGCAAAAAAACCTGGTAAAGCTACTATCAAAGTGTTATCTGTATATGATTCACTAAATTATGATGAGGTCCTTGTTGAAGTCTCCATTCCTTCTTCTATGGTTATGCTTCACAATTTTCCCGTAGAAACTGTTGTTGGATCGCATCTTCAAGCTGCCGTGACAATGAAAGCAGCAAATGGTGCCTTTTTCTATAGATGTGATGCCTTTAATTCTTTGATAAAGTGGAAAGCTGGAAGTGAGTCTTTTGTAATTGTCAATGCAACTCAGGAGTTGTTATACTTGGAAACAGTGCCAAATACTCAATTCCAGTCATCAGTTGATGGCTCTCCTTGTTCGTGGACATATGTATATGCTTCTAATCCTGGTCAAGCTGTGATCCACGCCATATTTTCTAAAGAAGATCACCACTACAGTCTTGGTCCTGGTGTATTAAAAGCATCTTCACGTATTGTGGCATATCTACCCCTTATTGTGCGTCAGGCAGGTGATGGAAACCAATTTGGTGGTTACTGGCTTGATTTGGTTCAAGCCGAAAGTAACAAGCAGTCTCATAGCTTAGAGGAGTTATATCTTGTACCTGGTACAAGTTTAGACATAGTACTTGTTGGTGGACCTGAATGGTGGGACAATGGTGTTGATTTCATTGAAACTGTAGAAGTTTTGGATGAAGGGAATGCTCTGGCTGAAGATGGAGTTCTAGTGCATCGGGTCTCTAGTAATTTGTATGGAGTTTTATGTCAAAAACTGGGATCCTTTAAACTTCTTTTCAGACGTGGAAATTTGGTCGGGGATGACCATCCTCTGCCATCAGTAGCTGAAGTTTGGCTGTCAGTAACATGCAACATTCCTTCTTCTATTGTACTTATAGCTGATGAACCAGTGAATGAACGAAGAATTATTAAAGCAGCAGCTCAAGCTGAACGTAGTTCAGGTAGACTTCGTGATACCCCTGTTATTGTGGCAAATGGGCGCTCTATTCGTGTATCTGCAGTTGGTATCAGTGATTCGGGAGAGGCTTATGCAAATTCATCTTCTCTCAGTTTGAGGTGGGAACTTGGCAGTTGCGAGGGACTGGCATATTGGGATTATGCTTTTGATATAGTGAAGTCTAACAGTTGGGAGAGATTTCTGGTCTTGCAAAATGAATCAGGATTGTGCACTGTTCGTGCTACTGTTACTGACTTTGCTGATAGCTTGGGAGATGATACATTTCATCGATTTACTAAAACTGAAAATGTTCTGACAGATGCAATTCGGTTACAGCTTGTTTCTACCCTAAGAGTTGATCCAGAGTTCAACTTGATATATTTCAATCCTAATGCAAAGGTAAATTTGTCAATTATTGGTGGGAGCTGTTTCTTGGAAGCTGTTACAAATGATTCTCAAGTTGTTGAAGTTATTCAACCACCATCGGGATTAGAATGCCTACAATTGATTTTGTCCCCTAAAGGATTAGGGACAGCTAATCTGACTATATATGACATTGGGCTAACCCCTCCACAAAGAGCTTCTGCGCTCGTTCAAGTTGCAGATATAGAGTGGATCAAGATCATATCAGGAGCAGAGATTAGCCTGATGGAAGGAAGTTTGCAAACTATTGACTTATTGGCTGGTACTAATGGTGGAAATAATTTTCATGCTTCTCAGTTTGTTTACATGAATCTTCATGTACATGTTGAAGATAGTATAATTGAGCTGGTGGATACTGAAGACTTCTCAAGTCTTGTTGGTGGACATGTTAATGCACCAAGTTTTAAAATAAAGGGGAGACATCTTGGAATTACAACCCTTTATGTCAGTGCTATACAACATTTGGGACATGTAATACAAAGTCAAGCCATTAAGGTAGAAGTTTATGCAGCCCCAAGAATACACCCTCACGATATTTTCCTACTACCTGGTGCATCATATGTGCTTACCATGGAAGGAGGCCCAACTCTGGGTGTTCATGTTGAGTATGAAATTGACAATGATAAAATTGCGAGTATTGATAGATATTCTGGACGGCTCTTAGCAAGTTCTATTGGTAACACTACAATTATTGCTAGTGTCTTTGCAAATGGTAATACTGTGATTTGTGAAGCACGGAGTTTTTTAAGGGTGGGAGTTCCATCTACTGTCACATTGCATGTACAGAGTGAACAACTTGGGATTGGCCGCAAATTGCCAATTTATCCGTTATTTCCTGAGGGAACTTTGTCTTCTTTCTATGAGCTATGTAAAAATTACCAGTGGAGTATTGAAGATGAAAAGGTATTGAGCTTCAAGGTGGCAGAGACCTTGCATGAGGATAGTATCCAGTTGACTGCTTCAGCAGGAAGTCAAGTTAATAGTTATTTTGATGACAATGACCTTGGTTTTATTAATGTCTTGTATGGAAGATCTGCAGGCAAGACCAATGTTGCTGTCTCTTTCTCATGTGAACTTTCAACTTCTGGGTCAAGGACACAGTCAAGGTTTTACAGTTCATCTTTATCAGTTACAGTGATTCCTGATCTTCCCCTGGCTTTGGGAGTCCCCATAACCTGGATTCTTCCTCCCTATTATACAATGACAAGCCCTTTGCCTTCATCATCAGAATCCCATTCTCAGAATGATAGTCGGAATCGCAGAGGAACCATTAGCTATTCTTTATTGAGAAGTTTGGAGAAAAATGAAGCTCTGCAAAAAGATGCTATATTCATTGATGCGGATAGAATTAAAACAACCAAAAGTAACAATCTTGCTTGCATTCAAGCTAAAGATCGTACAACTGGAAGAACAGAGATTGCTTCTTGTGTCAAGGTTGCTGAGGTGACTCAAATTAGAATAGCCAGTAAGGAGGTTCTGCTCAATATAATTAACCTTGCCGTTGGTGCAGAACTTGATCTTCCAACAAGCTTTTATGATGCTCTAGGAAATCCTTTCCATGAAGCATACAATGCAGTACCTTTTTATGCTGAAACTAACTACCCTGATGTTCTCTGCGTAAACAAAACAGCTGATGGAAAAGGCAATGTCCATATCAAGGCAATTCAGCATGGTAAAGCTCTTGTGCGTGTAGCAATTAGTGAAGATCTGCAAAAATCAGATTATGTGCTGATTAGAGTGGGTGCCCATATATATCCTCAAAATCCAGTTCTTCACATAGGAAGTCCTCTTAACCTAAGCATAAAAGGTTTGAGTGATACAATTTCTGGACAGTGGTTTACCACAAATGGAAGTGTAATATCAGTTGATACATTATCTGGGATGGCCAAAGCTATTGGGGAAGGTTCAGCACAAGTATCTTTCCATTACGGAAGATTGAGACTACAAACAACAATTACAGTGTTGAAAGGAAATTATATTTTTGTGAATGCTCCAAAAGAGACGTTAACTAATGTCCCGTACCCTTCAAAAGGATACAACTTCTCCGTGAAATTCAGTGAATCCCTTGGTGCACCTGGAGAAAAGAAGAGAATTTTATTCAATTGTAGAGTAGATCCACTATTTGTGGGGTATGTGAAGCCATGGCTGGATCAGGACTCTGGCAACTCATATTGCTTATTTTTCCCTTACTCACCAGAGCATTTGGTGCACTCAGTACCTAAGTTAGAAGGCATGAGGCCAGATGTATCACTCTCCATTTCTGCTTCCCTTGAACACGAACATGTTTCTGGATCTGCTTCAGCACTTTTTATTGGAGGATTTTCTATAATGGAGATGAGCAAGAATTCGATGCAGCTGAATTTGACGCCAGGCTCTAACAAAACTTGCATTACTGTCTTGGGAAATACTGATGTTGAAATTCACTGGCATCACCGAGACTTGATTATGATCAGTCTCATCCATAAAGAAGATTTTGGCATTCGAGGGTTTGCACGGTATGAGGTCAAATTGCTTAAAGCCAAGAGATTCAAAGATAGAATCATCATCACTCTCCCAGCTAATGGCCAGAGTGTGGAGATAGACATCAACCATGAACCCGAGGAAACAGCATCATCCAGCGTAACCATAAATAAGGCCTTCTGGGCAAGCATCCTGGGGTATTTGCTGCTGTTGATTTTATCAATTGCTATCATCACACGTTTCTTGGACAGACCAGAGAGATCTCAGCAAACAAGTTCTTCAGTTACTACTACTCCAAGCATTGCAGCGCCCACAACTCCTGACAGAAGCACCCCATCATCTGTTGTAAATGACTCCTCTCCTCGAACACCTCAACCATTTGTAGACTATGTAAGGAAAACGATCGATGAAACTCCATATTATAAGCGAGAAGGGAGAAGAAGGATTAATCCACAGAACACAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAGTATGGTGAGATCACGGATTCGGTCATCATGAAGGACAGGAAAACTGGGCAGCCTCGTGGATTTGGGTTTATAACGTATGCGGATCCCTCTGTGGTCGATAAAGTCATTGAGGATCCTCATATTATCAATGGCAAACAAGTTGAGATTAAGCGGACGATACCGAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACACGCTATGGCGAAGTTAAAGATCACCAAATAATGCGGGACCACTCTACCAACCGATCTCGTGGCTTTGGGTTTATCACATTTGACTCTGAAGAAGCAGTTGATGATCTGCTGTCCATGGGAAACAAAATTGACTTTGCTGGATCTCAGGTGGAAATCAAGAAAGCTGAACCAAAGAAGCCAAGCTCAGCACCTCCATCATCCAAGCGCCATAACGACTCTAGGTCTTCATATAGCAGTGGTGGATATGGAGATACTTACGATGGATTTGGTGGCAGCTTTGGAATGGGGGGTGGGTATAGGTCAGGTGGTAGGGGTGGTGCTTATGGTGGCTTTGGAAGTGAATTTGGTGGGTATGGAGGATATGCTGGTGAGATGGGGCCGTATAGAGGAGATCTCTCCCTCGGGTATGCTGGTCGTTATGGTGGAAACTTTAGCAGAGGGTATGATCTTGGTGGGTATGGCGGTCCTAGTGAGAATTATGGAGCATATGGTGCAGGTGGGGGTTCTTCTGGCGGTGGTGGTGCCTACCAAAGTGGCTATGATGGAAACCTAGGAGGTGGATATGGAGGGGCTAGTGGTGGCCCCTTCTATGGGAGCAGTAGAGCAGGATACAGTGCTGGTCGATATCATCCTTATGGAAGATAA 6831 0.4181 MNDLIRGKMVNMALLLSFLVTATVLASSSHAASSGPHIADVNILLPPKMTFPVDYRLQGSDGCFQWSWDHHDILSVEPEYNSSSKCSTSARIRSIAPYSGRKETAVYAADLQTGIVIRCKVFIDNISRIQIFHNSIKLDLEGLATLRVRAFDSEENVFSSLVGLQFMWSLMPEANGLPCHLVNVPLKDSPLSDCGGLCGNLDIQIKLEDNGVFSDLFVVKGIEIGHEIVSVHLLEPQLKNLADEIVLTVAEAMSLDPPSPVFVLVGAVIPYTLKVIRGNVPQVVTLPSAHHQWSVSNASVAQVDSKTGLAYAWNLGMAAVIVEDTRIAGHVQVSSLNVVLPASLCLYISPLSSSGDPVEGIKSIALTTRWYVVSGHQYLIQIKVFAHDHDAQEIYITENDDVKVYDNDSGHWKTFWVSNDIAVKHGWRNSKILKAYSPGLEKLTASLSYPGGADDKKEIIKAVQEVMVCDRVKYTLGNESGIILLPWSPGVYQEVELKAIGGCAKTVSDYKWLSSDLSTVSVSAFGVVQAKKPGKATIKVLSVYDSLNYDEVLVEVSIPSSMVMLHNFPVETVVGSHLQAAVTMKAANGAFFYRCDAFNSLIKWKAGSESFVIVNATQELLYLETVPNTQFQSSVDGSPCSWTYVYASNPGQAVIHAIFSKEDHHYSLGPGVLKASSRIVAYLPLIVRQAGDGNQFGGYWLDLVQAESNKQSHSLEELYLVPGTSLDIVLVGGPEWWDNGVDFIETVEVLDEGNALAEDGVLVHRVSSNLYGVLCQKLGSFKLLFRRGNLVGDDHPLPSVAEVWLSVTCNIPSSIVLIADEPVNERRIIKAAAQAERSSGRLRDTPVIVANGRSIRVSAVGISDSGEAYANSSSLSLRWELGSCEGLAYWDYAFDIVKSNSWERFLVLQNESGLCTVRATVTDFADSLGDDTFHRFTKTENVLTDAIRLQLVSTLRVDPEFNLIYFNPNAKVNLSIIGGSCFLEAVTNDSQVVEVIQPPSGLECLQLILSPKGLGTANLTIYDIGLTPPQRASALVQVADIEWIKIISGAEISLMEGSLQTIDLLAGTNGGNNFHASQFVYMNLHVHVEDSIIELVDTEDFSSLVGGHVNAPSFKIKGRHLGITTLYVSAIQHLGHVIQSQAIKVEVYAAPRIHPHDIFLLPGASYVLTMEGGPTLGVHVEYEIDNDKIASIDRYSGRLLASSIGNTTIIASVFANGNTVICEARSFLRVGVPSTVTLHVQSEQLGIGRKLPIYPLFPEGTLSSFYELCKNYQWSIEDEKVLSFKVAETLHEDSIQLTASAGSQVNSYFDDNDLGFINVLYGRSAGKTNVAVSFSCELSTSGSRTQSRFYSSSLSVTVIPDLPLALGVPITWILPPYYTMTSPLPSSSESHSQNDSRNRRGTISYSLLRSLEKNEALQKDAIFIDADRIKTTKSNNLACIQAKDRTTGRTEIASCVKVAEVTQIRIASKEVLLNIINLAVGAELDLPTSFYDALGNPFHEAYNAVPFYAETNYPDVLCVNKTADGKGNVHIKAIQHGKALVRVAISEDLQKSDYVLIRVGAHIYPQNPVLHIGSPLNLSIKGLSDTISGQWFTTNGSVISVDTLSGMAKAIGEGSAQVSFHYGRLRLQTTITVLKGNYIFVNAPKETLTNVPYPSKGYNFSVKFSESLGAPGEKKRILFNCRVDPLFVGYVKPWLDQDSGNSYCLFFPYSPEHLVHSVPKLEGMRPDVSLSISASLEHEHVSGSASALFIGGFSIMEMSKNSMQLNLTPGSNKTCITVLGNTDVEIHWHHRDLIMISLIHKEDFGIRGFARYEVKLLKAKRFKDRIIITLPANGQSVEIDINHEPEETASSSVTINKAFWASILGYLLLLILSIAIITRFLDRPERSQQTSSSVTTTPSIAAPTTPDRSTPSSVVNDSSPRTPQPFVDYVRKTIDETPYYKREGRRRINPQNTKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIDFAGSQVEIKKAEPKKPSSAPPSSKRHNDSRSSYSSGGYGDTYDGFGGSFGMGGGYRSGGRGGAYGGFGSEFGGYGGYAGEMGPYRGDLSLGYAGRYGGNFSRGYDLGGYGGPSENYGAYGAGGGSSGGGGAYQSGYDGNLGGGYGGASGGPFYGSSRAGYSAGRYHPYGR* 2277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0029 2276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2043 2111 IPR000504 GO:0003723
Gso5g0029 2276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1955 2021 IPR000504 GO:0003723
Gso5g0029 2276 MobiDBLite consensus disorder prediction 1887 1926 - -
Gso5g0029 2276 MobiDBLite consensus disorder prediction 1887 1923 - -
Gso5g0029 2276 SMART bid_2 478 554 IPR003343 -
Gso5g0029 2276 SMART bid_2 1557 1632 IPR003343 -
Gso5g0029 2276 SMART bid_2 1147 1223 IPR003343 -
Gso5g0029 2276 MobiDBLite consensus disorder prediction 2112 2141 - -
Gso5g0029 2276 Pfam Bacterial Ig-like domain (group 2) 495 542 IPR003343 -
Gso5g0029 2276 Pfam Bacterial Ig-like domain (group 2) 1153 1213 IPR003343 -
Gso5g0029 2276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2041 2119 IPR000504 GO:0003723
Gso5g0029 2276 PANTHER NUCLEAR PORE MEMBRANE GLYCOPROTEIN 210 28 1911 - -
Gso5g0029 2276 SUPERFAMILY RNA-binding domain, RBD 1948 2031 IPR035979 GO:0003676
Gso5g0029 2276 MobiDBLite consensus disorder prediction 2126 2141 - -
Gso5g0029 2276 PANTHER NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED 28 1911 IPR045197 -
Gso5g0029 2276 CDD RRM1_hnRNPA_hnRNPD_like 1955 2025 - -
Gso5g0029 2276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1953 2029 IPR000504 GO:0003723
Gso5g0029 2276 Gene3D - 2034 2147 IPR012677 -
Gso5g0029 2276 SUPERFAMILY RNA-binding domain, RBD 2039 2145 IPR035979 GO:0003676
Gso5g0029 2276 SUPERFAMILY Invasin/intimin cell-adhesion fragments 506 556 IPR008964 -
Gso5g0029 2276 Gene3D - 462 559 - -
Gso5g0029 2276 Gene3D - 1951 2032 IPR012677 -
Gso5g0029 2276 SMART rrm1_1 2042 2115 IPR000504 GO:0003723
Gso5g0029 2276 SMART rrm1_1 1954 2025 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0029 Gso-Chr5 235777 275603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0029 1955 2120 Eukaryotic Initiation Factors Gene Family AT1G71770 26.136 8.19e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0029 K14314 - gmx:100778001 3816.54