Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0028 ATGGAAAAAGAGGTTGTGGAAAACCTTTGGAACGGTGATAGAGATTCTCAAATTCAAGCAGCTTTGGAACTGGGTAGATTAAGCAGGAAGCAGAGGCACAAGTTGGAAGAGAGTGGTGTTATGGTTCCTCTTGTTTCCATGCTTCATTCTCAAGACTATGAAGCCATAGAAGCTGCTTTGTGTGCCTTGCTCAGCCTTTCCTTTGGCAGTGAAAGAAATAAGATTCGGATCATCAAATCTGGAGCTTTGCCAGTTCTGGTGAGTCTCCTCTATTGTCATAGCCAGACAGTGATCATACAATTGACATTAGCAGCCATGCTAACCCTCTCTTCTTGCAAGGCAAATAAGGTAGCAATTGCTTCATCTGGGGCTATCCAACTCTTGGCTGAATTTGTCAACAGCAATTGTAGCACTCAGTCTCAGCTTGATGCTATAGCTACTCTACACAACCTCACAACCTGCAAAGAGATTATGCCATTGATTGTCTCTTCTGGTGTTATGTTCTCCTTGCTTGAACTGATCCACAGCACAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGAGTTGCTAGAGAACATTGTGTCTTCATCAGAGAGTGCACTTTGTAAGGCTGCTGGTGCTGGTGGAGCGATCGGGATACTAGTCGAGACTATTGAAGATGGATCTTTACTAAGCAAAGAGCATGCAGTGAGTATACTTTTACTTATATGCCAGAGCTGCAGAGAGAAATATAGAGGGTTGATTTTGACAGAGGGAGTGATGCCAGGATTGCTTCAGTTAAGTGTGGATGGAACATGGAGAGCCAAATCCATCGCTCAAGAACTGTTGTTGCTTCTGAGGGACTGCTCCAATTATGGCTCAAGATGTAAACAAATCAATCATGAGCTTATAGAACGGATAATGGAAGAAATTGAAGCAGAAGGAGAGAAATTGGCAGATACTACTTTAAGGTTGGTAGAGGAAATGATTGCAAAGCTCAATGCTTAA 990 0.4253 MEKEVVENLWNGDRDSQIQAALELGRLSRKQRHKLEESGVMVPLVSMLHSQDYEAIEAALCALLSLSFGSERNKIRIIKSGALPVLVSLLYCHSQTVIIQLTLAAMLTLSSCKANKVAIASSGAIQLLAEFVNSNCSTQSQLDAIATLHNLTTCKEIMPLIVSSGVMFSLLELIHSTVKSSPLVEKAIELLENIVSSSESALCKAAGAGGAIGILVETIEDGSLLSKEHAVSILLLICQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSIAQELLLLLRDCSNYGSRCKQINHELIERIMEEIEAEGEKLADTTLRLVEEMIAKLNA* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0028 329 SUPERFAMILY ARM repeat 4 311 IPR016024 -
Gso5g0028 329 Pfam Armadillo/beta-catenin-like repeat 71 99 IPR000225 GO:0005515
Gso5g0028 329 Gene3D - 3 204 IPR011989 -
Gso5g0028 329 Gene3D - 205 308 IPR011989 -
Gso5g0028 329 PANTHER U BOX DOMAIN-CONTAINING 1 309 - -
Gso5g0028 329 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 309 - -
Gso5g0028 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 39 81 IPR000225 GO:0005515
Gso5g0028 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 124 IPR000225 GO:0005515
Gso5g0028 329 SMART arm_5 70 111 IPR000225 GO:0005515
Gso5g0028 329 SMART arm_5 28 68 IPR000225 GO:0005515
Gso5g0028 329 SMART arm_5 154 196 IPR000225 GO:0005515
Gso5g0028 329 SMART arm_5 112 153 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0028 Gso-Chr5 232150 233965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0028 3 282 U-box Gene Family AT2G23140 33.922 2.99e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0028 - - gmx:100778534 594.734