Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0023 ATGGCTAGGAGCTGGCTTATTGACATTGGAGGATTTGCAAGGAAAGTGAAAAATACTAATCTGTCAACAGATGATCAAATAAAGGACTGTGGAACATATCTTGAATGCCAGAAATGTCATTATCATATTGATAACAATGATGTTTCTCATGAGTGGCCTGGCTTTCCTGTGGGTGTGAAGTTTGATCCTTCTGATGTTGAGCTTTTAGAGCATTTAGCAGCAAAGTGTTGTATTGGAGACAGAGAGCCACACATGTTTATTCACGAGTTCATCCCAACTCTAGAAGGAGAGCTAGGTATTTGCTACACTCATCCACAAAATCTTCCAGGTGCTAAGACGGATGGGAGTAGTGTCCATTTCTTTCACAAAACAGTTAATGCATATGCTACTGGACCAAGGAAGCGTCGAAAGATTCATCATCAAGATGGTATGACTGAGGAGCATGTACGCTGGCACAAGACTGGTAGGACCAAAGCTGTGATAGAAGATGGAGTGCATAAGGGTTTTAAGAAGATCATGGTTCTCTATATAAGATCTAAGAAAGGCTCCAAGCCATATAAAACCAATTGGGTGATGCATCAGTACCATCTAGGGAGTGAAGAAGATGAGAAGGATGATGAATATGTGGTTTCAAAAATATTTTATCAACGGCAGAAGCACAGTGAGAAGAATGAGGAGAATACAGTGGTTGAGGATTCTAACATAGCAGCACAAGCAGGTCCAAGAACCCCAAAACCAAATCCCCCTACTCGACCTTGTACAGGAAAATGTGATGACAATTTTGATGAAAATGAACTTCTGTCATTCATCCAGGATGCCAAGCCTATACCTGGAGAATCACATGCACCACCATACGATGTTCAAGATGAGGACAATAAGGACGACCCTGCATGGTTGGCTGGTGAATCACAAGCTGACTTTGATGGCTTGGAAGACATATTATTATGTAAGGATATGTTAGATTCATCTTCTCTCTTAAACCATTCTGGATTGAGCTCCACTTATAATGCCAATGCAAACAAGTTGGTTACACCTGGAACCGATAATGATTATGCATCTTATGGAGTTTCTGTCCTGGACACCCTTGAATTTGATACTCCTCCTGATTTTGATCTTTCTAATTTGCAATTTGGTTCTCAAGACAGCACCCTTCAGTGGATTGACACACCATAA 1173 0.4092 MARSWLIDIGGFARKVKNTNLSTDDQIKDCGTYLECQKCHYHIDNNDVSHEWPGFPVGVKFDPSDVELLEHLAAKCCIGDREPHMFIHEFIPTLEGELGICYTHPQNLPGAKTDGSSVHFFHKTVNAYATGPRKRRKIHHQDGMTEEHVRWHKTGRTKAVIEDGVHKGFKKIMVLYIRSKKGSKPYKTNWVMHQYHLGSEEDEKDDEYVVSKIFYQRQKHSEKNEENTVVEDSNIAAQAGPRTPKPNPPTRPCTGKCDDNFDENELLSFIQDAKPIPGESHAPPYDVQDEDNKDDPAWLAGESQADFDGLEDILLCKDMLDSSSLLNHSGLSSTYNANANKLVTPGTDNDYASYGVSVLDTLEFDTPPDFDLSNLQFGSQDSTLQWIDTP* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0023 390 MobiDBLite consensus disorder prediction 272 291 - -
Gso5g0023 390 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 388 - -
Gso5g0023 390 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 388 IPR044799 GO:0003700
Gso5g0023 390 Gene3D NAC domain 64 222 IPR036093 GO:0003677|GO:0006355
Gso5g0023 390 MobiDBLite consensus disorder prediction 220 258 - -
Gso5g0023 390 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Gso5g0023 390 SUPERFAMILY NAC domain 40 216 IPR036093 GO:0003677|GO:0006355
Gso5g0023 390 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0023 Gso-Chr5 190596 195353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0023 38 218 NAC Transcription Factor Family AT1G28470 56.593 1.89e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso5g0023 NAM 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0023 - - gmx:100780662 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0023 5 190596 195353 Gso19g0498 19 10262180 10266900 GST