Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0022 ATGGGATCTGGCAATGAGGTTCACTCAGTTGGGGACTTCAATTTAGATTCCAAGTGGCTTGTAGATCCCAAACAACTATTTATTGGTCCAAAAATTGGGGAGGGTGCTCATGCCAAAGTATATGAAGGAAAATATAAAAATCAAAATGTTGCTGTTAAGATTATCAACAAGGGAGAAACTCTGGAAGAGATTTCTAGGAGAGAGGCTCGGTTTGCAAGAGAGGTTGCTATGTTGTCGAGAGTTCAACACAAAAATCTGGTTAAGTTTATTGGGGCTTGCAAAGAACCTGTCATGGTTATAGTAACTGAACTTCTATTGGGTGGGACATTGCGCAAATATCTCTTGAATATGCGTCCAAAGTGCTTGGATATGACTGTGGCTATTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGTGATCTTAAACCCGATAACTTGATCTTGACAGATGATCATAAGGCAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACTGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCAGAACTATACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGTTACCCTTTGAAGGCATGTCTAATCTACAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAAGAGGATCCGAATGATCGACCAAATTTCAGTCAAATCATACAGATGCTCCTTCGATATCTCTCCACCGTTTCACCACCAGAACCGGTTGTTCCTCTGCGGATTACTTCATCTGAGAACGCGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGGCTCTAGAGAAACCACAACAGCCAAAGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGA 1041 0.4227 MGSGNEVHSVGDFNLDSKWLVDPKQLFIGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETLEEISRREARFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDMTVAIGFALDIARAMECLHSHGIIHRDLKPDNLILTDDHKAVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFSQIIQMLLRYLSTVSPPEPVVPLRITSSENAVLPPESPGTSALMLGRDGSRETTTAKGFFFCFNQCY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0022 346 Gene3D Transferase(Phosphotransferase) domain 1 107 297 - -
Gso5g0022 346 PANTHER SERINE-THREONINE PROTEIN KINASE 1 328 - -
Gso5g0022 346 CDD STKc_MAP3K-like 32 286 - -
Gso5g0022 346 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Gso5g0022 346 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0022 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Gso5g0022 346 PANTHER PROTEIN KINASE ATN1 1 328 - -
Gso5g0022 346 SUPERFAMILY Protein kinase-like (PK-like) 17 310 IPR011009 -
Gso5g0022 346 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Gso5g0022 346 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Gso5g0022 346 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Gso5g0022 346 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Gso5g0022 346 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g0022 346 PIRSF TyrPK_CSF1-R 115 312 - -
Gso5g0022 346 PIRSF TyrPK_CSF1-R 12 125 - -
Gso5g0022 346 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Gso5g0022 346 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0022 Gso-Chr5 185047 189079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0022 1 341 MAP Kinase Kinase Kinase AT3G27560 76.836 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso5g0022 PK_Tyr_Ser-Thr 8.4e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0022 - - gmx:100792887 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0022 5 185047 189079 Gso19g0496 19 10181179 10184500 GST
Gso18g2466 18 57376789 57379367 Gso5g0022 5 185047 189079 PCT
Gso8g3004 8 47727743 47729489 Gso5g0022 5 185047 189079 PCT