Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0019 ATGCTGAAAGCAAGCTCTCTATCCTTTCTGGTAGCAATGCCCTCTGCAACTGCAAGCTTCGGATTCTTCTTCTGTCGACAACGCCTTTCTTCTTCTTTCCCCTTCCCTCCGCGTCCAAGACTCCTCTCCACCACTCCCACCCCATACCCTCTCCAATACGAACTCATCATCAACCGTCCTTCTTACCCCGACTCTCCCCGCCCACCACCTGCTCGACCTATTGACTCCCCTGAACCCGAACTCAACAAGGCCCAGAGGAAGTACTACAACAAACGCAGAAAGAGGATGTACGGCTCCGACGAAGATGAATCCCGACGCCCCGACGAGACCTTCGTGGAGTTGAAGCCCGAGGTGGTGGACTTTCCCACTCTGCACAAGAGGGAGGAAGAGCTTTACTTCTATGACGCCTTTACTTATCCCTGGGAGAAGGACAAGCATTACAAGATGGTTTACCAGCTGGAGAAGAAGTACTTTCCTGATCAATGCCTCGACAAGGCGTTTCTCCAACCGGGACAGTCAAATGCTAATGCTAATGGGAAGGGAAAGGGTAGGAAGAAAGTTGTTGGTGGTGGCGGTGGTGATGAAAAGTTGGTGTTTTTTGAGGAGGGGAATGTGGAGGAGAAGGGCGAGGAGAGTGGAAGTGGAAGCAGACAACTTAAGGAGAAGAAGGTTGAGGACTTCTTCAAGGGTTTGAAGAAGGATCCTAGTCCTAGTCTTAACAAGGATGTTCAAGTTGGAGAGCCTTTTCTCTCCTCAAGGAGGACTGGTCTTCCTCCCGTCTGGGATACTCCTCATGGCACTGTGCTCTTGGTCAACAAACCAAAAGGTTGGACTTCATTCACGGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACTCTTGACCCAATGGCTACGGGTTTATTGATTGTTTGTGTTGGTAAAGCAACGAAACTGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAACGTGAGCCATGGGAGCACATCAAAGATGAAGATATAAAGAGAAATGCTTTGTCCTTTTCTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGCGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCCAGACGAATATCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTGACATGTTCCAAAGGGACATATATTCGGTCACTCTGCGCTGATTTTGGGAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCAGATGATGCATGGGAGTTTCAAGAGCTGGAAGAGGCTATCACCAAAAATTATCTCTAA 1458 0.4767 MLKASSLSFLVAMPSATASFGFFFCRQRLSSSFPFPPRPRLLSTTPTPYPLQYELIINRPSYPDSPRPPPARPIDSPEPELNKAQRKYYNKRRKRMYGSDEDESRRPDETFVELKPEVVDFPTLHKREEELYFYDAFTYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLQPGQSNANANGKGKGRKKVVGGGGGDEKLVFFEEGNVEEKGEESGSGSRQLKEKKVEDFFKGLKKDPSPSLNKDVQVGEPFLSSRRTGLPPVWDTPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFSGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFQELEEAITKNYL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0019 485 Pfam tRNA pseudouridylate synthase B C-terminal domain 438 481 IPR032819 -
Gso5g0019 485 MobiDBLite consensus disorder prediction 94 109 - -
Gso5g0019 485 MobiDBLite consensus disorder prediction 60 109 - -
Gso5g0019 485 TIGRFAM TruB: tRNA pseudouridine(55) synthase 267 476 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gso5g0019 485 Hamap tRNA pseudouridine synthase B [truB]. 265 485 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gso5g0019 485 Gene3D Pseudouridine synthase 262 484 - -
Gso5g0019 485 SUPERFAMILY Pseudouridine synthase 267 480 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gso5g0019 485 CDD PseudoU_synth_EcTruB 268 479 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gso5g0019 485 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 241 483 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gso5g0019 485 MobiDBLite consensus disorder prediction 62 76 - -
Gso5g0019 485 Pfam TruB family pseudouridylate synthase (N terminal domain) 287 437 IPR002501 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0019 Gso-Chr5 172416 178399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0019 268 459 NAC Transcription Factor Family AT3G57150 33.854 1.32e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0019 K03177 - gmx:100793939 854.358