Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2152 ATGCAGCCTCGCCAGAGTAGGAGAAACTATGTTGAAGGTTCTGATTTGGCGGAGAGTGAATCTAATTCTAAGCACTTTCTGAAGATCATACTTCCATCACCCATTCATGCCAACCAAATGAGGATTCCTGAAGAATTTATTAAAAGATTTGGAGATGAACTATCTAATGTTGCTACGGTTACTGTTCCCGATGGCCGTGTTTGGAAAATGAGATTGAAGAAATGTGGTAAAGATGTTTCGTTCCGCAGCAAATGGCGAGAGTTTGTAGAATACTATTCTCTCGGTTATGGTTCCTACCTAGTTTTCAGATATGAAGGGAATTCAAAATTTCGTGTTCTGATATTTGATACTACTTCTGCTGAGATTTGTTATCCAGACTTGGACAATAGGAAGAGGTCCAAGGTTGATGATCAAACAAGAAAGAAAGAGCATAAGGAAGCTATTGATGAAGATGACGTGAATTTGAAAGCATGGAAGAAAGAAAGTGATTGTTCGGAGATAGCAAAGGATGCTTCTACCAAGCCAAAACACCCTTCTGTTACTTGTACCATCCAGCCTTATCGGTTGTATGTGAGAAGTCACTTTTCTAAAAAGCATCTGAAGCCAAATGTTTGTATGATGCTCCAAAATTGTAATGGGGAGCAGTGGGATGTTTCTTGCGTATGCCATAATACGCGCTATGGAGGAATGATGCTAACAAGAGGATGGCGTAAATTTGTAAGGGACAACGATCTATCCGAAGGAGATCCTTGCGTATTGGAGTTGATCGAGACCAACCCAGCTGTTGTGCTTAAACTTACTGTGCTTGGTGCACCTGAATATCACAGTTCACGTCCGCACTGA 843 0.4104 MQPRQSRRNYVEGSDLAESESNSKHFLKIILPSPIHANQMRIPEEFIKRFGDELSNVATVTVPDGRVWKMRLKKCGKDVSFRSKWREFVEYYSLGYGSYLVFRYEGNSKFRVLIFDTTSAEICYPDLDNRKRSKVDDQTRKKEHKEAIDEDDVNLKAWKKESDCSEIAKDASTKPKHPSVTCTIQPYRLYVRSHFSKKHLKPNVCMMLQNCNGEQWDVSCVCHNTRYGGMMLTRGWRKFVRDNDLSEGDPCVLELIETNPAVVLKLTVLGAPEYHSSRPH* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2152 280 Gene3D - 159 274 IPR015300 -
Gso4g2152 280 SMART B3_2 26 118 IPR003340 GO:0003677
Gso4g2152 280 SMART B3_2 179 272 IPR003340 GO:0003677
Gso4g2152 280 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
Gso4g2152 280 PANTHER B3 DOMAIN-CONTAINING 21 154 - -
Gso4g2152 280 PANTHER B3 DOMAIN-CONTAINING 168 269 - -
Gso4g2152 280 Gene3D - 17 120 IPR015300 -
Gso4g2152 280 ProSiteProfiles B3 DNA-binding domain profile. 206 272 IPR003340 GO:0003677
Gso4g2152 280 CDD B3_DNA 187 259 IPR003340 GO:0003677
Gso4g2152 280 Pfam B3 DNA binding domain 26 117 IPR003340 GO:0003677
Gso4g2152 280 Pfam B3 DNA binding domain 188 260 IPR003340 GO:0003677
Gso4g2152 280 SUPERFAMILY DNA-binding pseudobarrel domain 19 117 IPR015300 -
Gso4g2152 280 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 168 269 - -
Gso4g2152 280 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 21 154 - -
Gso4g2152 280 SUPERFAMILY DNA-binding pseudobarrel domain 175 264 IPR015300 -
Gso4g2152 280 CDD B3_DNA 24 116 IPR003340 GO:0003677
Gso4g2152 280 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2152 Gso-Chr4 51963823 51965854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2152 18 151 B3 DNA Binding Superfamily AT1G49475 40.441 1.29e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso4g2152 B3 1.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2152 - - gmx:100800609 586.645