Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2126 ATGCCTCGCCAACCTCCGCCTTCACCTCCGTCTCAGCCTGGTGTTCTCGACCCTGCACTCTGGCTTGTCTGCGCCGGAACCACCGTGGAGATCCCCACCCTCCATTCTAGGGTTTACTACTTCCCTCAGGGACACTTCGATCAAGCCTCTTCCGCTCCAAGAAACCTCTCCCCTCTCCTTCTTTCGAAACCCGCCGTTCTCTGCCGCGTCGAATCGGTTCAATTCCTCGCCGATCCTCTCACCGACGAGGTTTTCGCGAAGCTGATTCTTCACCCTGTCGCTGATTGCTTCGCTTCGGGACCTTCCGCTGTTGCTCCTGCTGCTGCTTCTGCTTCGGCTCAAACCGGTGAGAATAACGTCGTTTCTTTCTCGAAGGTTCTCACTGCTTCTGATGCTAATAACGGTGGGGGGTTTTCTGTTCCGAGGTTCTGCGCGGACTCTATCTTCCCGCCGCTGAACTTCCAGGCGGACCCGCCGGTGCAGAACCTCCTCGTCACCGACGTGCACGGTTTCGTCTGGGAGTTCCGCCACATTTACCGCGGGACCCCGCGGCGGCACCTGCTGACCACCGGCTGGAGCACGTTCGTCAACAACAAGAAGCTCGTGGCCGGTGACGTCGTCGTGTTCATGAAGAACTCCAGGGGAGGGTTGTTCGTCGGAATTCGCCGCGCCACGCGCTTCTCTATGGGGAAGGGTGGTGATAGAGGCGGAATGAGGATCAGGGTGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGTGAGGGAGGTTTTCTCGAGGGACGGGAGGGGGAAGCTGTCGGCGAAGGTGGTTGCCGAGGCGGCGGAGCTGGCGGCGCGGAACATGCCGTTCGAGGTTGTTTATTATCCGAAGGAAAGGTGGTCGGAGTTTGTGGTGAAGACTGAAGCGGTTAATGAAGCAATGAAGGTCGCGTGGAGTCCCGGAATGAGAGTGAAGATCGCTGCGGAGACAGATGATTCGTCCAGGGTGTCGTGGTGTCAGGGTACGGTCTCTTCTGTCGCTCTTCACGGTAATGGCCAATGGCGCGGTTCTCTTTGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGGTTTGCAGATAGCAAAATGGGTCAGCCCTTGGCAGGTGGAACTTGTTTCAACCACACCTGCACTTCATTCAGCATTCCCCCCAATAAAAAGGATTAAAGCTGCTCATGATTCTGGGGTGTTTACTAATGGAGAGAGAGACCCCTTTCCTATGACAGGATTCACTAATTCAACAATGGGACAACTGAATCAGGCATTGTTGAGTTATGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGCATTTTCTGCATCAAGATTTTGCAATTATCCAACTGACATGTCTCGTCTGTGTATGGGTAATTCCTTTGGGAAGAGCACATTTCCATGGCTGAAAACTTTGGAAACAGAGGTAAATGTTGGCAGCTCTCAATCTGATGAATTGTCACCTGATAGCCGTGGTAGTCTCCAATCCTGTGGCACAGACCTTGTTGGCAACTCAAGAAAACTTGGGTCTGTTTCATTTCAACTATTTGGTGCAGTCATTCAGACAGAACAGCCTGTTGAAAATGGTTTGCAAGGTACTGGTTGCACTTGCACGGGAGATGAATGCCAATGTCAAAGAGCCCTCAACAGCTGA 1698 0.5359 MPRQPPPSPPSQPGVLDPALWLVCAGTTVEIPTLHSRVYYFPQGHFDQASSAPRNLSPLLLSKPAVLCRVESVQFLADPLTDEVFAKLILHPVADCFASGPSAVAPAAASASAQTGENNVVSFSKVLTASDANNGGGFSVPRFCADSIFPPLNFQADPPVQNLLVTDVHGFVWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDVVVFMKNSRGGLFVGIRRATRFSMGKGGDRGGMRIRVDEEEEEEEEEEEEEEEEEVREVFSRDGRGKLSAKVVAEAAELAARNMPFEVVYYPKERWSEFVVKTEAVNEAMKVAWSPGMRVKIAAETDDSSRVSWCQGTVSSVALHGNGQWRGSLWRMLQVTWDEPEGLQIAKWVSPWQVELVSTTPALHSAFPPIKRIKAAHDSGVFTNGERDPFPMTGFTNSTMGQLNQALLSYGTFPAGMQGARHDAFSASRFCNYPTDMSRLCMGNSFGKSTFPWLKTLETEVNVGSSQSDELSPDSRGSLQSCGTDLVGNSRKLGSVSFQLFGAVIQTEQPVENGLQGTGCTCTGDECQCQRALNS* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2126 565 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677
Gso4g2126 565 Gene3D - 318 392 - -
Gso4g2126 565 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso4g2126 565 PANTHER AUXIN RESPONSE FACTOR 9 561 - -
Gso4g2126 565 MobiDBLite consensus disorder prediction 243 262 - -
Gso4g2126 565 SMART B3_2 123 225 IPR003340 GO:0003677
Gso4g2126 565 Coils Coil 235 267 - -
Gso4g2126 565 MobiDBLite consensus disorder prediction 241 265 - -
Gso4g2126 565 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Gso4g2126 565 CDD B3_DNA 122 223 IPR003340 GO:0003677
Gso4g2126 565 Gene3D - 120 225 IPR015300 -
Gso4g2126 565 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 561 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso4g2126 565 SUPERFAMILY DNA-binding pseudobarrel domain 114 228 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2126 Gso-Chr4 51742878 51747189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2126 16 555 B3 DNA Binding Superfamily AT1G77850 46.801 3.40e-161 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso4g2126 B3 1.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2126 - - gmx:102662128 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2126 4 51742878 51747189 Gso4g2126 4 51742878 51747189 ECH