Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2117 ATGGCACAAACGCTGGCAATGCCCGTGGCACCTTCGCTAGCTATCATCTCCAATTCTCGCCTCTCCAACACACTCTCCGTTCCCGTTCTGAACAAACCAAAGGTTCAAGGGTCAAGCATCAAGTGCGTTCGTGTTGGCGGTGTGGAGATTCCGAACAACAAGCGAATCGAGTACTCGCTGCAGTACATTCATGGAGTTGGAAGGACCAGAGCGAAACAGATTCTCTGTGATATCCAAATGGATAATAAAATCACGAAGGAACTCACTGAGGAGGAGCTAATCACACTCAGGGACGAGGTCTCCAAATACATGATTGAAGGCGACCTGAGACGGTTCAATGCGGTTAATATAAAGAGACTGAAGGATATTCAGTGCTACAGAGGAATAAGGCATATTCAGGGGCTTCCTTGCAGAGGCCAGCGAACCAAGAATAATTGCAGAACCTTGAAGGGTAAGAAGGTTGCCATTGCCGGTAAAAAGAAAAAGTAA 489 0.4703 MAQTLAMPVAPSLAIISNSRLSNTLSVPVLNKPKVQGSSIKCVRVGGVEIPNNKRIEYSLQYIHGVGRTRAKQILCDIQMDNKITKELTEEELITLRDEVSKYMIEGDLRRFNAVNIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2117 162 Hamap 30S ribosomal protein S13 [rpsM]. 42 158 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso4g2117 162 ProSitePatterns Ribosomal protein S13 signature. 127 140 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso4g2117 162 Gene3D - 43 111 - -
Gso4g2117 162 ProSiteProfiles Ribosomal protein S13 family profile. 45 151 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso4g2117 162 Pfam Ribosomal protein S13/S18 44 148 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso4g2117 162 SUPERFAMILY S13-like H2TH domain 43 154 IPR010979 GO:0003676
Gso4g2117 162 Coils Coil 86 106 - -
Gso4g2117 162 TIGRFAM uS13_bact: ribosomal protein uS13 44 153 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso4g2117 162 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 161 - -
Gso4g2117 162 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 1 161 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso4g2117 162 Gene3D 30s ribosomal protein s13, domain 2 112 162 IPR027437 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2117 Gso-Chr4 51651609 51652530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2117 43 160 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 31.250 2.87e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2117 K02952 - gmx:100500355 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2117 4 51651609 51652530 Gso4g2117 4 51651609 51652530 ECH
Gso4g2117 4 51651609 51652530 Gso6g0924 6 8866264 8867405 GST