Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2113 ATGGAGGATTTGCAAAGTGGTCTGCAGAATCGCAAATTATCACTCTCAACCCTCCCAGAAAAGGGTCGTTCTCTCTTGGCCACTAGGGATTTCTATCCAGGGGAAGTGATTATAAGCCAAGAGCCTTACGTTTGTGTTCCAAACAACTCCTCGGTCTCCCCCCAGAAAAGGTGCGATGGATGTTTCACTACAATTAATAACAACGTCCTTAGCAGGTGCTCGCGTTGCCAACTTGCATTCTATTGTGGAACCGCATGTCAGAGGTCAGAGTGGAAGCTGCATCGTCTTGAGTGTGAGGTCCTCTCCAGCCTCCACAAATACAAGAGAAAATCTCTCACACCATCCATACGCCTGATGCTCAGACTTTATCTTCGGAGGAAGTTGCAAAATGATAAGATCATCCCAAGCACTGCAATGGACAACTACAACTTGGTGGAGGCATTAGTGGCTCACATGTCTGACATCACAGAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTAAACTCCATACTAGAATGGCCAGGAATCAATATAAAAGAGATTGCTGAAAATTTTTCTAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTGTGGGAACAGGATTGTATCCTGTTATTTCCATCATCAATCACAGCTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGCTCAGCTTTGGTACGTGCGGTGCAGCATATACCCTCAGGTACTGAGGTGCTGATAAGTTACATAGAGACTGCTGAAAGCACTATGACTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTACATGTCCTCGCTGTTCTAAAGTGGGTCAGTATGATGATATCCAAGAAAGTGCAATTCTAGAAGGATACAAATGCAAAAGTGAAAAATGTGGTGGTTTCTTGCTTCGTACAACTGATTATCAAGAAGCTATTTCCATATATAAAAGGATTGAGAAGCTGCAAACAGAACTCTTTCATCCTTTATCAATCAACTTGATGCATACTAGGGAGAAGATTTTGAAGTCACTAATGGAGCTGGAACACTGGACAGAAGCTTTAGCATATTGCAAATTGACCATACCATTCTATCAAAGAGTGTATCCAGCTGTTCACCCTCTGCCTGGCTTGCAATATTATACTTGTGGAAAACTAGAATGGTATCTTGGAGACACAGAGGAAGCTGTTAAATCACTGACCAAGGCCGTGGATATACTACGGATTACTCATGGCACAAATACACCTTTCATGAAGGACCTCTTGATGAAGTTGGAAGAAGCCCGTACTGAAGCTTCTTACAAATTTTCCTCTAAAGAGTAG 1338 0.4297 MEDLQSGLQNRKLSLSTLPEKGRSLLATRDFYPGEVIISQEPYVCVPNNSSVSPQKRCDGCFTTINNNVLSRCSRCQLAFYCGTACQRSEWKLHRLECEVLSSLHKYKRKSLTPSIRLMLRLYLRRKLQNDKIIPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVNSILEWPGINIKEIAENFSKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGSSALVRAVQHIPSGTEVLISYIETAESTMTRQKALKEQYLFTCTCPRCSKVGQYDDIQESAILEGYKCKSEKCGGFLLRTTDYQEAISIYKRIEKLQTELFHPLSINLMHTREKILKSLMELEHWTEALAYCKLTIPFYQRVYPAVHPLPGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILRITHGTNTPFMKDLLMKLEEARTEASYKFSSKE* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2113 445 Pfam MYND finger 58 98 IPR002893 -
Gso4g2113 445 Gene3D Tetratricopeptide repeat domain 366 443 IPR011990 GO:0005515
Gso4g2113 445 ProSiteProfiles Zinc finger MYND-type profile. 58 98 IPR002893 -
Gso4g2113 445 ProSiteProfiles SET domain profile. 11 253 IPR001214 GO:0005515
Gso4g2113 445 SUPERFAMILY TPR-like 305 411 IPR011990 GO:0005515
Gso4g2113 445 SUPERFAMILY SET domain 12 252 IPR046341 -
Gso4g2113 445 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 313 - -
Gso4g2113 445 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 312 437 - -
Gso4g2113 445 SMART set_7 11 259 IPR001214 GO:0005515
Gso4g2113 445 Gene3D - 111 195 - -
Gso4g2113 445 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 312 437 - -
Gso4g2113 445 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 313 - -
Gso4g2113 445 Pfam SET domain 22 252 IPR001214 GO:0005515
Gso4g2113 445 Gene3D SET domain 24 279 IPR046341 -
Gso4g2113 445 ProSitePatterns Zinc finger MYND-type signature. 58 98 IPR002893 -
Gso4g2113 445 Gene3D - 57 110 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso4g2113 SET 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2113 K11426 - gmx:100789518 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2113 4 51585411 51591334 Gso4g2113 4 51585411 51591334 ECH