Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2112 ATGGATGGGAAGCCTAACCCGGATTCCTCCTCCACGGACCTCCTCCGCGACGTTCAAGCCGCCTTGAAACGACACCGTCCTCTCGGTACAATGCAGTCCAATTGCATAAGGCCAAAGCGCCCGCTACTTCCTCAAAGAAGAGCATCAAACATTTCTTCTTCTTCCGATGCCACCAATTCTCAAGAAGAAGCTTCTTCCAAGGATTCGCTTATAACCGTCGTCCCTGCTCAAAACCTAGACGCTCAGAAGAAAGTCCAGTTTTCAGCTCGAAGCAACGCTGCCTTGCAGGATGGAAAGGCCACTGAGTTGGAGAATTTATCTTCTCACATGAGTTCGCTTGGATTCGCAGAAATGGAGTGGGTTGAAGGCAGTCAAATTGAATCATCCTCATCGTCGTCGCTTGGATGCATCCAGCTGGAGAATGTTCTGCAGGCAGGGTTTGACGCGAGTTTGAAATGTGAGAGTGGAGTGAGTTCCGTGCTACCAAAGAGAAGTTTGGTTACCCAGGATCATTTGCAGCAATTCAGAAGTTTTTTGAGTCAGCCCGCGACACAATCTTCGGTGGTGGGACCTTCTTGTGCTACAACTACCTCGGTTCATTCTACTTCAGCACCAATGCTAAATTCAGCAACACGATATTCTCATTTGCGTCAAGATGGTGGCTCAAGTGTGGCTGCTGAGCCTTTGGGGGAGGTTAATGCTAATCCTTGTCCTATAACTGAAGGGGTTGTGAAATCGGTTGATGTTTCCATAAAAGAAACGAATAGAATGTCGGTTGATCGGGGGGCAGAAGCTGAAGTCCGAGCTTCCGGTTCTTGTATTGATGATGCAGGGTTGTTATCTAAGGGGAGCAATCGATCTAAGGAGCAACAAGGGGGTGTGTTGAAGGAATCTGGCAATTCTAAATATACTTCTTGTGATGATGCGAAAGGGAAAGAGGCTGTGGATGTTGTCACTGTACAAACACAGGCTCCACTTCCCACAACCATAACCTCATCTTCAGATATGAAGTTGGGGTCTTCTAAGGAGGAAAAACGTGAGAAGACTGCAAGTAGTAAAGGTGCATCGGGTACCCGGAAAAGAACTTATGACCCTGATTTGTTTTTCAAAGTCAACGGCAAGCTTTATCAGCGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTGCACAAAGTGATCTCATCGGACTGTAGGATATATGCACTTAAAAAGATCAAGCTCAAGGGACGTGATTATGCTACTGCATATGGGTTTTGTCAAGAAATTGAGTATCTAAATAGGCTGAAGGGAAAGGATAACATCATACAGCTTATAGATTACGAGGTGACTGACAAGGCTTTACTTGAGGAAGTTATGAAAGGCTCCTTCAGTAATAAGGATGGCCGGGTCAAGGATGATGGATGTATATACATGGTGCTTGAATATGGGGAAATCGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATGGAAACAACAAAACTATAGACGAGAACTGGCTTCGATTTCATTGGCAGCAAATTCTTCTAGCTGTCAACACTATTCATGAGGAACGAATTGTGCACTCAGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCCCTAAAACTGATTGATTTTGGTATAGCCAAAGCAATAATGAGTGACACAACCAACATCCAACGGGATTCACAGGTGGGCACTCTAAGTTACATGTCTCCAGAAGCATTTTTGTGTAACGAGACTGATGCGAATGGAAACATCATAAAGTGTGGCCGACCATCAGATATCTGGTCCCTGGGCTGCATCCTTTATCAAATGGTATATGGGAGGACACCTTTTTCTGATTACAAGACATTTTGGGCGAAATTCAAAGTTATAACAGATCCAAATCATAAAATTACGTATGAACCAGTTTCAAACCCATGGCTTTTGGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGCTACTCCAACATCCTTTTCTTGTTCCTCCTGTACCATCTAATCCATCTTTGCCCCAAGATCATACCTGTAAATTGCTACAACTTATTTCTGAAACTTGTACATATGACCCTGAAGCAACCCAACTGTGTAGTCAGCTCCAACGGCTTCTTAGTGACCCACTTGAGAAAACAACTTGCTCACTATATTCACGAGATCAACAGCTAAAACTGCTGTCCCAAATGTCAGAACTCTGTATTCAGCTGCACGAACGTTTGACAAATATTGAAAACAAGTAG 2262 0.4439 MDGKPNPDSSSTDLLRDVQAALKRHRPLGTMQSNCIRPKRPLLPQRRASNISSSSDATNSQEEASSKDSLITVVPAQNLDAQKKVQFSARSNAALQDGKATELENLSSHMSSLGFAEMEWVEGSQIESSSSSSLGCIQLENVLQAGFDASLKCESGVSSVLPKRSLVTQDHLQQFRSFLSQPATQSSVVGPSCATTTSVHSTSAPMLNSATRYSHLRQDGGSSVAAEPLGEVNANPCPITEGVVKSVDVSIKETNRMSVDRGAEAEVRASGSCIDDAGLLSKGSNRSKEQQGGVLKESGNSKYTSCDDAKGKEAVDVVTVQTQAPLPTTITSSSDMKLGSSKEEKREKTASSKGASGTRKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSFSNKDGRVKDDGCIYMVLEYGEIDLAHMLSQKWKELDGNNKTIDENWLRFHWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFLCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHKITYEPVSNPWLLDLMKRCLAWDRNQRWRIPQLLQHPFLVPPVPSNPSLPQDHTCKLLQLISETCTYDPEATQLCSQLQRLLSDPLEKTTCSLYSRDQQLKLLSQMSELCIQLHERLTNIENK* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2112 753 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 6 722 IPR027084 GO:0004712|GO:0007093|GO:0051304
Gso4g2112 753 MobiDBLite consensus disorder prediction 22 69 - -
Gso4g2112 753 Gene3D Phosphorylase Kinase; domain 1 369 455 - -
Gso4g2112 753 MobiDBLite consensus disorder prediction 46 69 - -
Gso4g2112 753 Pfam Protein kinase domain 376 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g2112 753 PANTHER MIXED LINEAGE PROTEIN KINASE 6 722 - -
Gso4g2112 753 MobiDBLite consensus disorder prediction 326 359 - -
Gso4g2112 753 MobiDBLite consensus disorder prediction 338 359 - -
Gso4g2112 753 SMART serkin_6 376 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g2112 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Gso4g2112 753 MobiDBLite consensus disorder prediction 276 306 - -
Gso4g2112 753 MobiDBLite consensus disorder prediction 283 305 - -
Gso4g2112 753 ProSiteProfiles Protein kinase domain profile. 376 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g2112 753 CDD PKc_Mps1 374 669 - -
Gso4g2112 753 SUPERFAMILY Protein kinase-like (PK-like) 370 679 IPR011009 -
Gso4g2112 753 Gene3D Transferase(Phosphotransferase) domain 1 490 672 - -
Gso4g2112 753 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2112 Gso-Chr4 51580490 51585305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2112 382 670 MAP Kinase Kinase Kinase AT4G08470 29.010 3.23e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Gso4g2112 Pkinase 7.8e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2112 K08866 - gmx:100788990 1451.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2112 4 51580490 51585305 Gso4g2112 4 51580490 51585305 ECH
Gso4g2112 4 51580490 51585305 Gso6g0928 6 8936471 8941037 GST