Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2107 ATGGCCGAGAGTCGGAGATCCACGGGGACGGTTAAGTGGTTCAACTCGCAGAAGGGTTTCGGATTCATAACTCCCCAAGATGGAACCGATGATCTCTTCGTGCACTTCACTTCCATCCGATCCGACGGCTACCGTTCTTTATCCGAGGGTCAGTCCGTTGAGTTTCTCCTCGATTACGGCGACGACGGCCGCACCATGGCCGTCGACGTCACCTCCGCCGTTAGATCTCGCCGTCCAGGGGGCTTCCGCGGCGGAGGAGGGAGGGGAAGAGGAGGAGGCCGCGGCGGAGGGTTCGGTCGGAGAGGAGGAGGTCCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTGGCGAGGGATTGTTACCATGGACAGGGTGGTGGTGGTGGTGTTGATGGTGATGGTAGGAATCGGAGACGCGGCGGCGGTGGCGGTGGAGGAGGACGAGGGTGTTTTAACTGTGGGGAGGAAGGGCATTTTGTGAGGGAATGTCCGGATGTTGGGGAAAGGAAATGA 513 0.5828 MAESRRSTGTVKWFNSQKGFGFITPQDGTDDLFVHFTSIRSDGYRSLSEGQSVEFLLDYGDDGRTMAVDVTSAVRSRRPGGFRGGGGRGRGGGRGGGFGRRGGGPECYNCGRIGHLARDCYHGQGGGGGVDGDGRNRRRGGGGGGGGRGCFNCGEEGHFVRECPDVGERK* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2107 170 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Gso4g2107 170 SMART c2hcfinal6 149 165 IPR001878 GO:0003676|GO:0008270
Gso4g2107 170 SUPERFAMILY Retrovirus zinc finger-like domains 89 124 IPR036875 GO:0003676|GO:0008270
Gso4g2107 170 ProSiteProfiles Zinc finger CCHC-type profile. 150 165 IPR001878 GO:0003676|GO:0008270
Gso4g2107 170 Gene3D - 1 71 IPR012340 -
Gso4g2107 170 Gene3D - 141 170 - -
Gso4g2107 170 Gene3D - 99 140 - -
Gso4g2107 170 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Gso4g2107 170 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Gso4g2107 170 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Gso4g2107 170 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Gso4g2107 170 SMART csp_8 8 73 IPR011129 GO:0003676
Gso4g2107 170 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 165 - -
Gso4g2107 170 ProSiteProfiles Zinc finger CCHC-type profile. 107 120 IPR001878 GO:0003676|GO:0008270
Gso4g2107 170 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Gso4g2107 170 SUPERFAMILY Retrovirus zinc finger-like domains 131 167 IPR036875 GO:0003676|GO:0008270
Gso4g2107 170 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Gso4g2107 170 MobiDBLite consensus disorder prediction 76 98 - -
Gso4g2107 170 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Gso4g2107 170 MobiDBLite consensus disorder prediction 126 145 - -
Gso4g2107 170 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Gso4g2107 170 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Gso4g2107 170 Pfam Zinc knuckle 106 120 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2107 Gso-Chr4 51538435 51539303 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gso4g2107 CSD 1.9e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2107 - - gmx:100815731 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2107 4 51538435 51539303 Gso6g0933 6 8981593 8982527 GST