Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2101 ATGTCATTGAGTCCTCCCAGAGAGAGAAACAACAATGGGAATGCCCAAGCGAGGACGTTCCAGCTCTACTATTGCTTCCAGTGCAACCGCACGGTCCGCGCCGCACCCGATAACAACAACCCCACCCAAATCACGTGCCCGCGCTGCTTCGGCCAATTCATCTGCGAAATCAACATGCCGCGTCCAAGGCTCGTCGTGGACTTCACCACACCGGACCCCTCCCCAGAAGCGCGTTTGCTCGAAGCACTTTCCCTCATGATGGACCCTCCCATCCGCCGCTTCCCCGGTTTAATCCAACCCCAACCCGAAGAGCTCCCCGTCTACCACCGCCACCGCCGCCCTCGTCGCCGCCACCCCGAACCCGAACCCGAACCCCAACACCGCCCCCGCACCTGGATCGTTTTCCAGCCCATGGACCCATCCAACCCCTTCGAGCCCATTAACATCCCAAACCGACGCGGCCCAGGCCCAATCCACGGCCCGGGCCCAATCCCGCGCGGACTGGACGCGCGAGATTATTTCTTCGGGCCAGGGCTTAACGAACTCATCGAACAGATAACAGAAAACGACCGGCAGGGTCCGGCGCCGGCGCCGGAACGGGCTATCGAGGCTATTCCGACGGTGAAAATCGAGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCTGTTTGTCAGGAGGAGTTCGAAGTGGGTGGAGAAGCGAGGGAGCTTCAGTGCAAGCACATATATCACTCCGATTGCATTGTTCCGTGGCTGAGGCTGCACAATTCTTGCCCCGTGTGCCGGCACGAGGTTCCGGTGCCGTCGTCGTCGTCGTCGTCGTCGGAGGGTGATGAATGCGTTGGTGACGGCGGAGAAGGATATTCTCCATCTAACAGTCCCACATTATTCTCTAGAGCTAATCGGAGGCAGCCCTCTTGTTGCATTCTTTAA 933 0.5906 MSLSPPRERNNNGNAQARTFQLYYCFQCNRTVRAAPDNNNPTQITCPRCFGQFICEINMPRPRLVVDFTTPDPSPEARLLEALSLMMDPPIRRFPGLIQPQPEELPVYHRHRRPRRRHPEPEPEPQHRPRTWIVFQPMDPSNPFEPINIPNRRGPGPIHGPGPIPRGLDARDYFFGPGLNELIEQITENDRQGPAPAPERAIEAIPTVKIESAHLKENSQCPVCQEEFEVGGEARELQCKHIYHSDCIVPWLRLHNSCPVCRHEVPVPSSSSSSSEGDECVGDGGEGYSPSNSPTLFSRANRRQPSCCIL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2101 310 PANTHER - 13 283 - -
Gso4g2101 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 283 - -
Gso4g2101 310 MobiDBLite consensus disorder prediction 288 302 - -
Gso4g2101 310 Pfam zinc-ribbon 21 57 IPR039525 GO:0061630
Gso4g2101 310 SMART ring_2 221 261 IPR001841 -
Gso4g2101 310 MobiDBLite consensus disorder prediction 95 129 - -
Gso4g2101 310 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
Gso4g2101 310 Pfam Ring finger domain 220 262 IPR001841 -
Gso4g2101 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 268 IPR013083 -
Gso4g2101 310 MobiDBLite consensus disorder prediction 265 306 - -
Gso4g2101 310 SUPERFAMILY RING/U-box 201 268 - -
Gso4g2101 310 CDD RING-H2_RNF126_like 220 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2101 Gso-Chr4 51480105 51483196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2101 193 277 C3H Transcription Factor Family AT1G68180 52.941 3.46e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2101 K11982 - gmx:100787399 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2101 4 51480105 51483196 Gso4g2101 4 51480105 51483196 ECH