Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2100 ATGGTTAAGTTAGAGCACAAGATCAAAACAGAACCATCATCAAAGGAAATGCGGTTATCTTCACTCTCATCATCAGCATCAACATCATCAGATTGCAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGATCATGGGTGTCTGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGCTCTTATTCAACCCCGGAGGCTGCAGCTAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGATCCTCAGCAAATCTCAATTTCCCTTTAAGCTCTTCACAACAATACATTCCAGGAGAGGCTGTCATGTCCCCCAAATCAATCCAAAGAGTTGCTGCGGCCGCTGCAAATAGTTTCATTGACAATGCCAACACTCCCCCTTCCCCACCTCCTGCTTCTAACCCATCATCATTGGCCTCATCCCCCTCATTGGTCTCTTCTCCCTCGGATCAAATCGACGACAACGCATCGCTGATATCGTCTTTCGAAGCCTACACTAGTTGTGACCAAGCAAATCAACCAATGACTATGAATGTGATGGAACCTTGGTACACCTTTGCTGATGGTCTTCAATCCCCTAAGTATATTGATCAGATGCTAAGTGGTGCTTTCTTCGATTTCGATTCGTCTCATCTGTTTGATGATCTATACGAAGAAAGTGACATTCGTTTGTGGAGCTTCTGCTGA 699 0.4478 MVKLEHKIKTEPSSKEMRLSSLSSSASTSSDCKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPLSSSQQYIPGEAVMSPKSIQRVAAAAANSFIDNANTPPSPPPASNPSSLASSPSLVSSPSDQIDDNASLISSFEAYTSCDQANQPMTMNVMEPWYTFADGLQSPKYIDQMLSGAFFDFDSSHLFDDLYEESDIRLWSFC* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2100 232 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Gso4g2100 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 9 232 - -
Gso4g2100 232 CDD AP2 35 95 IPR001471 GO:0003700|GO:0006355
Gso4g2100 232 SUPERFAMILY DNA-binding domain 36 95 IPR016177 GO:0003677
Gso4g2100 232 MobiDBLite consensus disorder prediction 15 30 - -
Gso4g2100 232 MobiDBLite consensus disorder prediction 124 154 - -
Gso4g2100 232 Gene3D AP2/ERF domain 35 95 IPR036955 GO:0003700|GO:0006355
Gso4g2100 232 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Gso4g2100 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 232 - -
Gso4g2100 232 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Gso4g2100 232 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Gso4g2100 232 MobiDBLite consensus disorder prediction 1 34 - -
Gso4g2100 232 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2100 Gso-Chr4 51470916 51472418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2100 1 231 AP2-EREBP Transcription Factor Family AT1G21910 46.899 1.98e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g2100 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2100 - - gmx:100813615 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2100 4 51470916 51472418 Gso4g2100 4 51470916 51472418 ECH
Gso4g2100 4 51470916 51472418 Gso6g0941 6 9059655 9061241 GST