Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2088 ATGAAAACTGAAAAGAGTTCCCTCCAAATTCGGAAAGATGGAAACCGATTTCCCTCCAAATTTTTCTCACCCTATTTTCAACTCTCAAAATCACGCTCCTCTTTTCCTTTAACCCCAAATCCCAAAACCCTATCTTATAGATCTCATCAATTCAATTCCATCCAGATGGACGCCACCGTCACCGACCTCAGTCCCTCCTGCAATGCCGCCGCCGAACCGCCGCGCCGCAGTGTCCGCCGGCGACTGGTCCAGTCGACGCTCTTCCCTCACAAGCCACCGGAGCCTGATCAAAAGAACGACAAAGAGGACGAACGCGACGAGGATTACTCCGACTCTGAGAATCACAAGAAGAGGAAGAAACCCAAGGCTAAAACAACTCCTCGAAAAAAAGCTTCCAAGAATGCCACGCCAAAGAAAAATGTGTCGGCTAATGGGACTAACAAGGGGTCCACTTTGCGGCAGGTGTTAGCTGATTCCGATCGGGTTATTGCACCGGTGCATGATTTGTTTTTAGAAGCGAAATTGGCTGCTGAGGAAGATTCGAGGATATTCACAGGACGGCAGATACATCCATTTTTTTCACTGTGGAAGGCGGGGAAGAAAGTTCAGGACGTGGCTGATTCAGGAAGTAATTTATCAACAACAAAGAGTGAGGATGAAAGGACTACCTGTGGTCCTATTCATGTATTTGAAAATACTCAGGATGACACCTCATCCCTTGACTGGAGAAACTGGACGTTTTTGGAGAATACTACCTCTATGAACTATGGTTCAGAAAGTTTAAATTCATCTGTTTTGGAGGCTTCTGTTGAATCCTTGAATTTTGATAAGCTTCATAGTTCCTTGTATCCCTCAGGCGCTTCAATTTCTCAGAATTCCTTATCTTCAGATAGACTTTGTATACATCCAGAAAATCTGGAAGAACTATCACCATCAAACTCAGCTTCACTAGCAAAGCAAACATGTCCTCCGACATGTGAAGATGCCAAACTGGACTTGGAGGTGGATGAATCTGTTACTACAACAATGCAAGCTGACATTTTTAGAAAGTCGGATACTGAACCACCAATTAGATTTCTTCAAGAAAGTATGAGATCTTATTACTGTAGTTGTGTAGATAAGGCAGAGAACAGCTTATGGACATACAAATACAAGCCAACAAAGGCTGTTGAGGTGTGTGGTAATGATGAATCAGTGAACTTCTTGCGTGACTGGCTACATCTTTGGCATGAAAGACGTTATAAAAGCAGGAAGGATATCTCTGACATGGATAAAAGTGACATGCGAAATGTTGATGATGACGATGATGATTATAAATGCTCCTATAGTGATTACGATTCAGAAGATATAAATGAGGAGGATTCCCTGCAGAATGTTCTTTTAATTACGGGACCAATTGGGAGTGGAAAGTCTGCAGCAGTCTATGCTTGTGCCGAAGAGCAAGGGTTTGAGATTTTAGAGCTTAATGCATCAGATTGTAGAAATGGAACTGCTGTCAGGAATTATTTTGGAGATGCTCTTGGTTCACTTGGGTTCAAAAGGTCATCAGAAAACACTGCAAGTCCACAGAAGAAAACTACGAAGTTCCCCTTGGCTTTGGCTTTGTTCAGTGGTAAAGCTGCTGATGAGGTGAATGATGGGGTGGATGAACTGATAACCATACCTGATGATGAAGCTCATATCCCCAGTGGATCATTACAGAAGTTACTTGGCAAAAACAATGTAGTTGCATCATGTGATAAAGTGCAAACTTTAATTCTAATTGAGGATGTGGACATCCTTTCTCCTGAAGATCGTGGATGTATTGCTGCCATCCAACAGATTGCTGAGACTGCAAAGGGGCCAATTATATTGACCAGTAATAGTGATAATCCTGGCCTGCCAGATAATTTTGATGTGCTTCATGTTTCATTCGTGTTGCCATCACCAAAGGAGTTGCTTTGCCATTTGTATACTGTTTGTCTCACTGAGGGAGTCAACATCCATCCTCTTTTACTGGAGAAGTTTATACATTCTTGTGATGGAGATATCCGAAAATCCATTATGCATCTTCAGTTCTGGTTTCAGGGTAAAAGATTTCAAAAAGATGGAAAGGCACAAACACATTATGGCTCGCTTCCATTTGATCTTGAGCTTGGCCATCAGATACTACCGAAGATTATGCCCTGGGATTTCCCCTCAGAGATATCCAAACTAATTGAGAATGAAATCACCAAATCAACAAATAAAATGGAAGAAACTTCTAGAGGGTTGGTTACAGAGCTTCTTCACACAGATGAACAGAAAAATGATTTAAATGTGCAGTGTATGGAAGCTGATTATATAGAGGCCAAGAAGGTGGAGATGATTAAGAGAAATAATTCTTTGACAGATTACAGCGAGCTTGAAATTCAATATAATGCTATTTCTGAGTTTGCCAATTCTTCTGATTCCCCGCTTACATCCTGTCGGCAAAATGGTCGAAGGAAACTTGTAGTCATGTCCTCTGATTCTGAGGATGAGGATTCAAATAATAGATATCCTGTAGACACACATGATGAAGCTAATACAAGACAATTGATGAAAGAAAATAATGAATGTCCCTCTGAGCTTCAATTAAATGGAAACTACCCCAGCACAACACTTCGCAAGCTGGTTTGTTCTGAATTTCAGCATTCAGAGGAGGAACATTTTAAATATTCAGAAACAGCTGATGATACATGCTTAAATGAAACATGTAAATCATTAGATGCATCCTGTGTGCCAGAATCAACGTTTGTTCCTGAGACTGAAATTGAAAATGGAACGGAGTCAATTTCTGGAGCAGTGTCTTCTGGCCCTCTTGTTGGTCCTCAGGATCAGGAAGTTTCTGTGAATAATGAGTTGAAACCATTCTGTGTTCGAAGGCGCTTAACAAAATTGTCGCAAAATCCAGATTTGTTGGATACTGAAATTTCAGACCATTCTCCTAAAGGGGTTCTGCAAGATGTTCTAGATGAACATATAGAAACAATTGTTAATGTGATGGATGAGTGCAGTCGTGTGGATTTCAAAGCAAAGCCAATGTTTTTGCAGTCCAATCCATTAACAGAGACAGAAAAAATACAAAAATTGTGGAAAGATCTTCGTGAGCGTCGCATGGATTTAAAACAGCATGCTACCTCGGAACAGCTGGGTGCTTTTCAAGTTGTTAAACTTGCTAGTGGGCTGAACAATCTAATTTCAGAAGCTGACTTATTTCATAAACGTGATATTATGGAACCTTCAACGTTCCTTTCTGGTGAAGCCACATCTAGCTGGTATCATGAACAAATAATGACGTCCACTGTTGCTGAACATGGGTTTTGCTTTTACGCTAAGCTTATAGCAGATGAAGCATCAAAGTTGGGTTGTGCAAATTGTGTTGATATTACTTCTGAGATGTTGGCTTCCGCCATTAAATTATCCGGACAGGATCTCACAAAAAGCAAAGTTATCTATACTGGAAAGGAAGTAGAGTGGAAAAGCCCAATAAATAGTACGCAGAAGAGTGAAAACAAAACATCTCAGTTCAAAGCCATCCAATCCATTGTTCCTGCAAGAATATCCTTGGCATTGAAAGGTGGTGCATTCAATGAATATCTATCTTCATTACGCGAAATTACGAGGTCAGAAGCTTCCCGCATTTCACAAGAAGTTGAAAAGAATAGAAGAGGAAGGGTACGTGGTTTTCATCATTACTTGAGCAGATGTACCACGTTGTCTCCTGAAGATATATCTTTGGTGAGTGAGGGTAATCTGTACAGAAAGGATTCTTCACAACATACAACATAG 3792 0.4082 MKTEKSSLQIRKDGNRFPSKFFSPYFQLSKSRSSFPLTPNPKTLSYRSHQFNSIQMDATVTDLSPSCNAAAEPPRRSVRRRLVQSTLFPHKPPEPDQKNDKEDERDEDYSDSENHKKRKKPKAKTTPRKKASKNATPKKNVSANGTNKGSTLRQVLADSDRVIAPVHDLFLEAKLAAEEDSRIFTGRQIHPFFSLWKAGKKVQDVADSGSNLSTTKSEDERTTCGPIHVFENTQDDTSSLDWRNWTFLENTTSMNYGSESLNSSVLEASVESLNFDKLHSSLYPSGASISQNSLSSDRLCIHPENLEELSPSNSASLAKQTCPPTCEDAKLDLEVDESVTTTMQADIFRKSDTEPPIRFLQESMRSYYCSCVDKAENSLWTYKYKPTKAVEVCGNDESVNFLRDWLHLWHERRYKSRKDISDMDKSDMRNVDDDDDDYKCSYSDYDSEDINEEDSLQNVLLITGPIGSGKSAAVYACAEEQGFEILELNASDCRNGTAVRNYFGDALGSLGFKRSSENTASPQKKTTKFPLALALFSGKAADEVNDGVDELITIPDDEAHIPSGSLQKLLGKNNVVASCDKVQTLILIEDVDILSPEDRGCIAAIQQIAETAKGPIILTSNSDNPGLPDNFDVLHVSFVLPSPKELLCHLYTVCLTEGVNIHPLLLEKFIHSCDGDIRKSIMHLQFWFQGKRFQKDGKAQTHYGSLPFDLELGHQILPKIMPWDFPSEISKLIENEITKSTNKMEETSRGLVTELLHTDEQKNDLNVQCMEADYIEAKKVEMIKRNNSLTDYSELEIQYNAISEFANSSDSPLTSCRQNGRRKLVVMSSDSEDEDSNNRYPVDTHDEANTRQLMKENNECPSELQLNGNYPSTTLRKLVCSEFQHSEEEHFKYSETADDTCLNETCKSLDASCVPESTFVPETEIENGTESISGAVSSGPLVGPQDQEVSVNNELKPFCVRRRLTKLSQNPDLLDTEISDHSPKGVLQDVLDEHIETIVNVMDECSRVDFKAKPMFLQSNPLTETEKIQKLWKDLRERRMDLKQHATSEQLGAFQVVKLASGLNNLISEADLFHKRDIMEPSTFLSGEATSSWYHEQIMTSTVAEHGFCFYAKLIADEASKLGCANCVDITSEMLASAIKLSGQDLTKSKVIYTGKEVEWKSPINSTQKSENKTSQFKAIQSIVPARISLALKGGAFNEYLSSLREITRSEASRISQEVEKNRRGRVRGFHHYLSRCTTLSPEDISLVSEGNLYRKDSSQHTT* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2088 1263 CDD AAA 460 514 - -
Gso4g2088 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 693 IPR027417 -
Gso4g2088 1263 MobiDBLite consensus disorder prediction 85 151 - -
Gso4g2088 1263 MobiDBLite consensus disorder prediction 117 135 - -
Gso4g2088 1263 MobiDBLite consensus disorder prediction 93 116 - -
Gso4g2088 1263 MobiDBLite consensus disorder prediction 136 151 - -
Gso4g2088 1263 Gene3D - 641 703 - -
Gso4g2088 1263 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 133 1262 - -
Gso4g2088 1263 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 133 1262 IPR004582 GO:0006281
Gso4g2088 1263 Gene3D - 377 631 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2088 Gso-Chr4 51310417 51320170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2088 376 686 Core DNA Replication Machinery Family AT5G22010 22.956 1.24e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2088 - - gmx:100784209 2442.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2088 4 51310417 51320170 Gso4g2088 4 51310417 51320170 ECH
Gso4g2088 4 51310417 51320170 Gso6g0954 6 9189538 9200099 GST